| Systematic analysis of 1,298 RNA-Seq samples and construction of a comprehensive soybean (Glycine max) expression atlas. KC Moharana, F Almeida-Silva, RK Gazara, F Pedrosa-Silva, FS Coelho, ... The Plant Journal: for Cell and Molecular Biology, 2020 | 64 | 2020 |
| Pathogenesis-related protein 1 (PR-1) genes in soybean: Genome-wide identification, structural analysis and expression profiling under multiple biotic and abiotic stresses F Almeida-Silva, TM Venancio Gene 809, 146013, 2022 | 27 | 2022 |
| BioNERO: an all-in-one R/Bioconductor package for comprehensive and easy biological network reconstruction F Almeida-Silva, TM Venancio Functional & Integrative Genomics 22 (1), 131-136, 2022 | 26 | 2022 |
| Exploring the complexity of soybean (Glycine max) transcriptional regulation using global gene co-expression networks F Almeida-Silva, KC Moharana, FB Machado, TM Venancio Planta 252, 1-12, 2020 | 15 | 2020 |
| Integration of genome-wide association studies and gene coexpression networks unveils promising soybean resistance genes against five common fungal pathogens F Almeida-Silva, TM Venancio Scientific Reports 11 (1), 24453, 2021 | 14 | 2021 |
| Genome-Wide Analysis of the COBRA-Like Gene Family Supports Gene Expansion through Whole-Genome Duplication in Soybean (Glycine max) S Sangi, PM Araújo, FS Coelho, RK Gazara, F Almeida-Silva, ... Plants 10 (1), 167, 2021 | 9* | 2021 |
| Multiomic Approaches Reveal Hormonal Modulation and Nitrogen Uptake and Assimilation in the Initial Growth of Maize Inoculated with Herbaspirillum seropedicae LESS Irineu, CP Soares, TS Soares, FA Almeida, F Almeida-Silva, ... Plants 12 (1), 48, 2022 | 8 | 2022 |
| syntenet: an R/Bioconductor package for the inference and analysis of synteny networks F Almeida-Silva, T Zhao, KK Ullrich, ME Schranz, Y Van de Peer Bioinformatics, btac806, 2022 | 8 | 2022 |
| Integrating omics approaches to discover and prioritize candidate genes involved in oil biosynthesis in soybean DK Turquetti-Moraes, KC Moharana, F Almeida-Silva, F Pedrosa-Silva, ... Gene 808, 145976, 2022 | 8 | 2022 |
| cageminer: an R/Bioconductor package to prioritize candidate genes by integrating genome-wide association studies and gene coexpression networks F Almeida-Silva, TM Venancio in silico Plants 4 (2), diac018, 2022 | 7* | 2022 |
| Genomic Insights into Adaptation to Karst Limestone and Incipient Speciation in East Asian Platycarya spp. (Juglandaceae) Y Cao, F Almeida-Silva, WP Zhang, YM Ding, D Bai, WN Bai, BW Zhang, ... Molecular biology and evolution 40 (6), msad121, 2023 | 6 | 2023 |
| Whole-genome Duplications and the Long-term Evolution of Gene Regulatory Networks in Angiosperms F Almeida-Silva, Y Van de Peer Molecular Biology and Evolution 40 (7), msad141, 2023 | 4 | 2023 |
| Structural and Biochemical Characterization of Three Antimicrobial Peptides from Capsicum annuum L. var. annuum Leaves for Anti-Candida Use MB Cherene, GB Taveira, F Almeida-Silva, MS da Silva, MC Cavaco, ... Probiotics and Antimicrobial Proteins, 1-18, 2023 | 4 | 2023 |
| The state of the art in soybean transcriptomics resources and gene coexpression networks F Almeida-Silva, KC Moharana, TM Venancio in silico Plants 3 (1), diab005, 2021 | 4 | 2021 |
| Assessing the quality of comparative genomics data and results with the cogeqc R/Bioconductor package F Almeida‐Silva, Y Van de Peer Methods in Ecology and Evolution 14 (12), 2942-2952, 2023 | 3 | 2023 |
| The Soybean Expression Atlas v2: A comprehensive database of over 5000 RNA-seq samples F Almeida-Silva, F Pedrosa-Silva, TM Venancio The Plant Journal 116 (4), 1041-1051, 2023 | 2 | 2023 |
| Discovering and prioritizing candidate resistance genes against soybean pests by integrating GWAS and gene coexpression networks F Almeida-Silva, TM Venancio Gene 860, 147231, 2023 | 2 | 2023 |
| HybridExpress: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors F Almeida-Silva, L Prost-Boxoen, Y Van de Peer bioRxiv, 2024.04. 02.587701, 2024 | | 2024 |
| doubletrouble: an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications F Almeida-Silva, Y Van de Peer bioRxiv, 2024.02. 27.582236, 2024 | | 2024 |
| Transcriptome-based strategies for identifying aluminum tolerance genes in popcorn (Zea mays L. var. everta) VB Pinto, PMP Vidigal, M Dal-Bianco, F Almeida-Silva, TM Venancio, ... Scientific Reports 13 (1), 19400, 2023 | | 2023 |
Thiago M. VenancioAssociate Professor, Universidade Estadual do Norte FluminenseVerified email at uenf.br
