| Quantitative analysis of protein-RNA interactions by gel mobility shift SP Ryder, MI Recht, JR Williamson RNA-Protein Interaction Protocols, 99-115, 2008 | 196 | 2008 |
| Argonaute protein identity and pairing geometry determine cooperativity in mammalian RNA silencing JA Broderick, WE Salomon, SP Ryder, N Aronin, PD Zamore Rna 17 (10), 1858-1869, 2011 | 165 | 2011 |
| RNA target specificity of the STAR/GSG domain post-transcriptional regulatory protein GLD-1 SP Ryder, LA Frater, DL Abramovitz, EB Goodwin, JR Williamson Nature structural & molecular biology 11 (1), 20-28, 2004 | 146 | 2004 |
| Quantitative approaches to monitor protein–nucleic acid interactions using fluorescent probes JM Pagano, CC Clingman, SP Ryder Rna 17 (1), 14-20, 2011 | 141 | 2011 |
| Complementary sets of noncanonical base pairs mediate RNA helix packing in the group I intron active site SA Strobel, L Ortoleva-Donnelly, SP Ryder, JH Cate, E Moncoeur Nature structural biology 5 (1), 60-66, 1998 | 138 | 1998 |
| Molecular basis of RNA recognition by the embryonic polarity determinant MEX-5 JM Pagano, BM Farley, LM McCoig, SP Ryder Journal of Biological Chemistry 282 (12), 8883-8894, 2007 | 124 | 2007 |
| Specificity of the STAR/GSG domain protein Qk1: implications for the regulation of myelination SP Ryder, JR Williamson Rna 10 (9), 1449-1458, 2004 | 105 | 2004 |
| Nucleotide analog interference mapping SP Ryder, SA Strobel Methods 18 (1), 38-50, 1999 | 103 | 1999 |
| A minor groove RNA triple helix within the catalytic core of a group I intron AA Szewczak, L Ortoleva-Donnelly, SP Ryder, E Moncoeur, SA Strobel Nature structural biology 5 (12), 1037-1042, 1998 | 101 | 1998 |
| Allosteric inhibition of a stem cell RNA-binding protein by an intermediary metabolite CC Clingman, LM Deveau, SA Hay, RM Genga, SMD Shandilya, F Massi, ... Elife 3, e02848, 2014 | 99 | 2014 |
| The ssDNA mutator APOBEC3A is regulated by cooperative dimerization MF Bohn, SMD Shandilya, TV Silvas, EA Nalivaika, T Kouno, BA Kelch, ... Structure 23 (5), 903-911, 2015 | 97 | 2015 |
| A quantitative RNA code for mRNA target selection by the germline fate determinant GLD‐1 JE Wright, D Gaidatzis, M Senften, BM Farley, E Westhof, SP Ryder, ... The EMBO journal 30 (3), 533-545, 2011 | 95 | 2011 |
| A conserved three-nucleotide core motif defines Musashi RNA binding specificity NR Zearfoss, LM Deveau, CC Clingman, E Schmidt, ES Johnson, F Massi, ... Journal of Biological Chemistry 289 (51), 35530-35541, 2014 | 83 | 2014 |
| Nucleotide analog interference mapping of the hairpin ribozyme: implications for secondary and tertiary structure formation SP Ryder, SA Strobel Journal of molecular biology 291 (2), 295-311, 1999 | 81 | 1999 |
| Investigation of adenosine base ionization in the hairpin ribozyme by nucleotide analog interference mapping SP RYDER, AK OYELERE, JL PADILLA, D KLOSTERMEIER, DP MILLAR, ... Rna 7 (10), 1454-1463, 2001 | 72 | 2001 |
| RNA recognition by the embryonic cell fate determinant and germline totipotency factor MEX-3 JM Pagano, BM Farley, KI Essien, SP Ryder Proceedings of the National Academy of Sciences 106 (48), 20252-20257, 2009 | 71 | 2009 |
| [6] Chemical probing of RNA by nucleotide analog interference mapping SP Ryder, L Ortoleva-Donnelly, AB Kosek, SA Strobel Academic Press 317, 92-109, 2000 | 69 | 2000 |
| The N-terminal peptide of the syntaxin Tlg2p modulates binding of its closed conformation to Vps45p MLM Furgason, C MacDonald, SG Shanks, SP Ryder, NJ Bryant, ... Proceedings of the National Academy of Sciences 106 (34), 14303-14308, 2009 | 68 | 2009 |
| Quaking Regulates Hnrnpa1 Expression through Its 3′ UTR in Oligodendrocyte Precursor Cells NR Zearfoss, CC Clingman, BM Farley, LM McCoig, SP Ryder PLoS genetics 7 (1), e1001269, 2011 | 63 | 2011 |
| RNA target specificity of the embryonic cell fate determinant POS-1 BM Farley, JM Pagano, SP Ryder Rna 14 (12), 2685-2697, 2008 | 61 | 2008 |
