| scGNN is a novel graph neural network framework for single-cell RNA-Seq analyses J Wang, A Ma, Y Chang, J Gong, Y Jiang, R Qi, C Wang, H Fu, Q Ma, ... Nature communications 12 (1), 1882, 2021 | 494 | 2021 |
| Integrative methods and practical challenges for single-cell multi-omics A Ma, A McDermaid, J Xu, Y Chang, Q Ma Trends in biotechnology 38 (9), 1007-1022, 2020 | 176 | 2020 |
| A shared disease-associated oligodendrocyte signature among multiple CNS pathologies M Kenigsbuch, P Bost, S Halevi, Y Chang, S Chen, Q Ma, R Hajbi, ... Nature neuroscience 25 (7), 876-886, 2022 | 127 | 2022 |
| Androgen conspires with the CD8+ T cell exhaustion program and contributes to sex bias in cancer H Kwon, JM Schafer, NJ Song, S Kaneko, A Li, T Xiao, A Ma, C Allen, ... Science immunology 7 (73), eabq2630, 2022 | 111 | 2022 |
| SENP3 maintains the stability and function of regulatory T cells via BACH2 deSUMOylation X Yu, Y Lao, XL Teng, S Li, Y Zhou, F Wang, X Guo, S Deng, Y Chang, ... Nature communications 9 (1), 3157, 2018 | 106 | 2018 |
| Single-cell biological network inference using a heterogeneous graph transformer A Ma, X Wang, J Li, C Wang, T Xiao, Y Liu, H Cheng, J Wang, Y Li, ... Nature Communications 14 (1), 964, 2023 | 66 | 2023 |
| Metabolic control of regulatory T cell stability and function by TRAF3IP3 at the lysosome X Yu, XL Teng, F Wang, Y Zheng, G Qu, Y Zhou, Z Hu, Z Wu, Y Chang, ... Journal of Experimental Medicine 215 (9), 2463-2476, 2018 | 51 | 2018 |
| Spatially resolved transcriptomics reveals genes associated with the vulnerability of middle temporal gyrus in Alzheimer’s disease S Chen, Y Chang, L Li, D Acosta, Y Li, Q Guo, C Wang, E Turkes, ... Acta Neuropathologica Communications 10 (1), 188, 2022 | 47 | 2022 |
| Immunomodulatory activity of Ganoderma lucidum immunomodulatory protein via PI3K/Akt and MAPK signaling pathways in RAW264.7 cells QZ Li, YZ Chang, ZM He, L Chen, XW Zhou Journal of Cellular Physiology 234 (12), 23337-23348, 2019 | 45 | 2019 |
| Treatment with soluble CD24 attenuates COVID-19-associated systemic immunopathology NJ Song, C Allen, AE Vilgelm, BP Riesenberg, KP Weller, K Reynolds, ... Journal of Hematology & Oncology 15, 1-18, 2022 | 39 | 2022 |
| Define and visualize pathological architectures of human tissues from spatially resolved transcriptomics using deep learning Y Chang, F He, J Wang, S Chen, J Li, J Liu, Y Yu, L Su, A Ma, C Allen, ... Computational and structural biotechnology journal 20, 4600-4617, 2022 | 37 | 2022 |
| IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq A Ma, C Wang, Y Chang, FH Brennan, A McDermaid, B Liu, C Zhang, ... Nucleic acids research 48 (W1), W275-W286, 2020 | 37 | 2020 |
| Wolframin is a novel regulator of tau pathology and neurodegeneration S Chen, D Acosta, L Li, J Liang, Y Chang, C Wang, J Fitzgerald, ... Acta Neuropathologica 143 (5), 547-569, 2022 | 27 | 2022 |
| MEKK3–TGFβ crosstalk regulates inward arterial remodeling H Deng, Y Xu, X Hu, ZW Zhuang, Y Chang, Y Wang, A Ntokou, ... Proceedings of the National Academy of Sciences 118 (51), e2112625118, 2021 | 21 | 2021 |
| Sex-biased adaptive immune regulation in cancer development and therapy JM Schafer, T Xiao, H Kwon, K Collier, Y Chang, H Abdel-Hafiz, C Bolyard, ... Iscience 25 (8), 2022 | 18 | 2022 |
| Downregulated miR‐27b promotes keratinocyte proliferation by targeting PLK 2 in oral lichen planus J Chen, G Du, Y Chang, Y Wang, L Shi, J Mi, G Tang Journal of oral pathology & medicine 48 (4), 326-334, 2019 | 18 | 2019 |
| Selective targeting of GARP-LTGFβ axis in the tumor microenvironment augments PD-1 blockade via enhancing CD8+ T cell antitumor immunity A Li, Y Chang, NJ Song, X Wu, D Chung, BP Riesenberg, M Velegraki, ... Journal for Immunotherapy of Cancer 10 (9), 2022 | 14 | 2022 |
| Dimension-agnostic and granularity-based spatially variable gene identification using BSP J Wang, J Li, ST Kramer, L Su, Y Chang, C Xu, MT Eadon, K Kiryluk, Q Ma, ... Nature Communications 14 (1), 7367, 2023 | 12 | 2023 |
| Deepmaps: Single-cell biological network inference using heterogeneous graph transformer A Ma, X Wang, C Wang, J Li, T Xiao, J Wang, Y Li, Y Liu, Y Chang, ... Biorxiv, 2021.10. 31.466658, 2021 | 12 | 2021 |
| MAPLE: a hybrid framework for multi-sample spatial transcriptomics data C Allen, Y Chang, Q Ma, D Chung bioRxiv, 2022.02. 28.482296, 2022 | 10 | 2022 |
