Antonio B. Oliveira Junior

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Jose OnuchicCTBP Rice UniversityVerified email at rice.edu
Vitor Barbanti Pereira LeiteProfessor Livre-Docente, Universidade Estadual PaulistaVerified email at unesp.br
Vinícius G. ContessotoResearch Scientist - Rice University - CTBP/BRCVerified email at rice.edu
Paul C WhitfordProfessor of Physics, Northeastern UniversityVerified email at neu.edu
Matheus Faria MelloGraduate Candidate at Rice UniversityVerified email at rice.edu
Jorge ChahineUniversidade Estadual PaulistaVerified email at unesp.br
Peter G. WolynesBullard-Welch Foundation Professor of Science, Professor of Chemistry, Professor of PhysicsVerified email at rice.edu
Ronaldo Junio de OliveiraUniversidade Federal do Triângulo MineiroVerified email at uftm.edu.br
Dr. Susmita RoyIndian Institute of Science Education and Research KolkataVerified email at iiserkol.ac.in
Sumitabha BrahmachariCenter for Theoretical Biological Physics, Rice UniversityVerified email at rice.edu
Fernando V. PaulovichAssociate Professor of Computer Science, Eindhoven University of TechnologyVerified email at dal.ca
Osvaldo N. Oliveira Jr.Instituto de Fisica de Sao Carlos, USP, BrazilVerified email at ifsc.usp.br
Daniel Lucas Zago CaetanoPost-Doctoral Reseacher at University of Sao PauloVerified email at unesp.br
Jorge Enrique Hernández GonzálezPosdoctoral Researcher, UNESPVerified email at unesp.br
Alexandre Suman de AraujoProfessor Assistente Doutor, Departamento de Física, IBILCE/UNESPVerified email at unesp.br
Lilian Hernández AlvarezInstituto de Biociências, Letras e Ciências Exatas de São José do Rio Preto/IBILCE/UNESPVerified email at unesp.br
Erez Lieberman AidenBaylor College of MedicineVerified email at erez.com
Vinicius Martins de OliveiraPostDoc fellow at Eli Lilly and CompanyVerified email at lilly.com
Esteban Dodero-RojasPostdoctoral Researcher at St Jude Children's Research Hospital

Antonio B. Oliveira Junior

Postdoctoral Research - Rice University - CTBP/BRC

Verified email at rice.edu

Genome Architecture Protein Folding Biological Physics


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A scalable computational approach for simulating complexes of multiple chromosomes ABO Junior, VG Contessoto, MF Mello, JN Onuchic Journal of molecular biology 433 (6), 166700, 2021	30	2021
Exploring energy landscapes of intrinsically disordered proteins: Insights into functional mechanisms AB Oliveira Junior, X Lin, P Kulkarni, JN Onuchic, S Roy, VBP Leite Journal of Chemical Theory and Computation 17 (5), 3178-3187, 2021	26	2021
Visualization of protein folding funnels in lattice models AB Oliveira Jr, FM Fatore, FV Paulovich, ON Oliveira Jr, VBP Leite PLoS One 9 (7), e100861, 2014	23	2014
Distinguishing biomolecular pathways and metastable states AB Oliveira Jr, H Yang, PC Whitford, VBP Leite Journal of chemical theory and computation 15 (11), 6482-6490, 2019	22	2019
SMOG 2 and OpenSMOG: Extending the limits of structure‐based models AB de Oliveira Jr, VG Contessoto, A Hassan, S Byju, A Wang, Y Wang, ... Protein Science 31 (1), 158-172, 2022	21	2022
Examining the ensembles of amyloid-β monomer variants and their propensities to form fibers using an energy landscape visualization method MN Sanches, K Knapp, AB Oliveira Jr, PG Wolynes, JN Onuchic, ... The Journal of Physical Chemistry B 126 (1), 93-99, 2021	19	2021
Computational study on the allosteric mechanism of Leishmania major IF4E-1 by 4E-interacting protein-1: Unravelling the determinants of m7GTP cap recognition L Hernández-Alvarez, AB Oliveira Jr, JE Hernández-González, J Chahine, ... Computational and Structural Biotechnology Journal 19, 2027-2044, 2021	13	2021
Introdução ao problema de enovelamento de proteínas: uma abordagem utilizando modelos computacionais simplificados V Godoi Contessoto, AB Oliveira, J Chahine, RJ Oliveira, VB Pereira Leite Revista Brasileira de Ensino de Física 40 (4), e4307, 2018	13	2018
Chromosome modeling on downsampled Hi-C maps enhances the compartmentalization signal AB Oliveira Junior, CP Estrada, EL Aiden, VG Contessoto, JN Onuchic The Journal of Physical Chemistry B 125 (31), 8757-8767, 2021	11	2021
Resolving the fine structure in the energy landscapes of repeat proteins MN Sanches, RG Parra, RG Viegas, AB Oliveira, PG Wolynes, ... QRB discovery 3, e7, 2022	7	2022
pH and charged mutations modulate cold shock protein folding and stability: A constant pH monte carlo study VM De Oliveira, DLZ Caetano, FB Da Silva, PR Mouro, AB de Oliveira Jr, ... Journal of Chemical Theory and Computation 16 (1), 765-772, 2019	7	2019
PyMEGABASE: predicting cell-type-specific structural annotations of chromosomes using the epigenome E Dodero-Rojas, MF Mello, S Brahmachari, ABO Junior, VG Contessoto, ... Journal of Molecular Biology 435 (15), 168180, 2023	6	2023
Biotin-painted proteins have thermodynamic stability switched by kinetic folding routes FC Freitas, M Maldonado, AB Oliveira Junior, JN Onuchic, RJ Oliveira The Journal of Chemical Physics 156 (19), 2022	5	2022
Structural reorganization and relaxation dynamics of axially stressed chromosomes BS Ruben, S Brahmachari, VG Contessoto, RR Cheng, ABO Junior, ... Biophysical Journal 122 (9), 1633-1645, 2023	4	2023
Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample M Sandoval-Velasco, O Dudchenko, JA Rodríguez, CP Estrada, ... Cell 187 (14), 3541-3562. e51, 2024	3	2024
Cultura Acadêmica PRÁTICAS DE ÓPTICA E INTRODUÇÃO À FÍSICA MODERNA: Coleta e Análise de Dados Experimentais JRB Abrego, AB de Oliveira Junior, DLZ Caetano, GV Bossa, ...

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