Thorsten Stoeck
Thorsten Stoeck
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The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
L Guillou, D Bachar, S Audic, D Bass, C Berney, L Bittner, C Boutte, ...
Nucleic acids research 41 (D1), D597-D604, 2012
Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
T Stoeck, D Bass, M Nebel, R Christen, MDM Jones, HW Breiner, ...
Molecular ecology 19, 21-31, 2010
CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms
J Pawlowski, S Audic, S Adl, D Bass, L Belbahri, C Berney, SS Bowser, ...
PLoS biology 10 (11), e1001419, 2012
Patterns of rare and abundant marine microbial eukaryotes
R Logares, S Audic, D Bass, L Bittner, C Boutte, R Christen, JM Claverie, ...
Current Biology 24 (8), 813-821, 2014
Marine protist diversity in E uropean coastal waters and sediments as revealed by high‐throughput sequencing
R Massana, A Gobet, S Audic, D Bass, L Bittner, C Boutte, A Chambouvet, ...
Environmental microbiology 17 (10), 4035-4049, 2015
Novel eukaryotic lineages inferred from small-subunit rRNA analyses of oxygen-depleted marine environments
T Stoeck, S Epstein
Applied and Environmental Microbiology 69 (5), 2657-2663, 2003
Novel eukaryotes from the permanently anoxic Cariaco Basin (Caribbean Sea)
T Stoeck, GT Taylor, SS Epstein
Applied and Environmental Microbiology 69 (9), 5656-5663, 2003
Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities
T Stoeck, A Behnke, R Christen, L Amaral-Zettler, MJ Rodriguez-Mora, ...
BMC biology 7, 1-20, 2009
A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples
T Stoeck, B Hayward, GT Taylor, R Varela, SS Epstein
Protist 157 (1), 31-43, 2006
Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions
A Behnke, M Engel, R Christen, M Nebel, RR Klein, T Stoeck
Environmental microbiology 13 (2), 340-349, 2011
Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap
T Cordier, L Alonso‐Sáez, L Apothéloz‐Perret‐Gentil, E Aylagas, ...
Molecular Ecology 30 (13), 2937-2958, 2021
Microbial eukaryotes in the hypersaline anoxic L'Atalante deep‐sea basin
E Alexander, A Stock, HW Breiner, A Behnke, J Bunge, MM Yakimov, ...
Environmental Microbiology 11 (2), 360-381, 2009
Microeukaryote Community Patterns along an O2/H2S Gradient in a Supersulfidic Anoxic Fjord (Framvaren, Norway)
A Behnke, J Bunge, K Barger, HW Breiner, V Alla, T Stoeck
Applied and Environmental Microbiology 72 (5), 3626-3636, 2006
Embracing environmental genomics and machine learning for routine biomonitoring
T Cordier, A Lanzén, L Apothéloz-Perret-Gentil, T Stoeck, J Pawlowski
Trends in microbiology 27 (5), 387-397, 2019
Fungal diversity in oxygen-depleted regions of the Arabian Sea revealed by targeted environmental sequencing combined with cultivation
CS Jebaraj, C Raghukumar, A Behnke, T Stoeck
FEMS Microbiology Ecology 71 (3), 399-412, 2010
Supervised machine learning outperforms taxonomy‐based environmental DNA metabarcoding applied to biomonitoring
T Cordier, D Forster, Y Dufresne, CIM Martins, T Stoeck, J Pawlowski
Molecular ecology resources 18 (6), 1381-1391, 2018
Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring
M Sagova-Mareckova, J Boenigk, A Bouchez, K Cermakova, T Chonova, ...
Water research 191, 116767, 2021
A molecular approach to identify active microbes in environmental eukaryote clone libraries
T Stoeck, A Zuendorf, HW Breiner, A Behnke
Microbial Ecology 53, 328-339, 2007
Comparing the hyper‐variable V4 and V9 regions of the small subunit rDNA for assessment of ciliate environmental diversity
M Dunthorn, J Klier, J Bunge, T Stoeck
Journal of Eukaryotic Microbiology 59 (2), 185-187, 2012
Beyond the “Code”: a guide to the description and documentation of biodiversity in ciliated protists (Alveolata, Ciliophora)
A Warren, DJ Patterson, M Dunthorn, JC Clamp, UEM Achilles‐Day, ...
Journal of eukaryotic Microbiology 64 (4), 539-554, 2017
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