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Vitor C. Piro
Vitor C. Piro
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Cited by
Cited by
Year
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
7892018
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
7272017
Critical assessment of metagenome interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
1822022
FGAP: an automated gap closing tool
VC Piro, H Faoro, VA Weiss, MBR Steffens, FO Pedrosa, EM Souza, ...
BMC research notes 7, 1-5, 2014
782014
DUDes: a top-down taxonomic profiler for metagenomics
VC Piro, MS Lindner, BY Renard
Bioinformatics 32 (15), 2272-2280, 2016
512016
MetaMeta: integrating metagenome analysis tools to improve taxonomic profiling
VC Piro, M Matschkowski, BY Renard
Microbiome 5, 1-11, 2017
472017
DREAM-Yara: an exact read mapper for very large databases with short update time
TH Dadi, E Siragusa, VC Piro, A Andrusch, E Seiler, BY Renard, K Reinert
Bioinformatics 34 (17), i766-i772, 2018
402018
ganon: precise metagenomics classification against large and up-to-date sets of reference sequences
VC Piro, TH Dadi, E Seiler, K Reinert, BY Renard
Bioinformatics 36 (Supplement_1), i12-i20, 2020
36*2020
SuRankCo: supervised ranking of contigs in de novo assemblies
M Kuhring, PW Dabrowski, VC Piro, A Nitsche, BY Renard
BMC bioinformatics 16, 1-7, 2015
132015
gNOMO: a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms
M Munoz-Benavent, F Hartkopf, T Van Den Bossche, VC Piro, ...
NAR genomics and bioinformatics 2 (3), lqaa058, 2020
112020
Draft Genome Sequence of Herbaspirillum huttiense subsp. putei IAM 15032, a Strain Isolated from Well Water
V de Souza, VC Piro, H Faoro, MZ Tadra-Sfeir, VK Chicora, D Guizelini, ...
Genome announcements 1 (1), 10.1128/genomea. 00252-12, 2013
92013
Contamination detection and microbiome exploration with GRIMER
VC Piro, BY Renard
GigaScience 12, giad017, 2023
72023
Benchmark data sets, software results and reference data for the first CAMI challenge
A Sczyrba, P Hofman, P Belmann, D Koslicki, S Janssen, J Dröge, ...
GigaScience Database, 2017
42017
ganon2: up-to-date and scalable metagenomics analysis
VC Piro, K Reinert
bioRxiv, 2023.12. 07.570547, 2023
2023
HiTaC: Hierarchical Taxonomic Classification of Fungal ITS Sequences
FM Miranda, VAC Azevedo, BY Renard, VC Piro, RTJ Ramos
bioRxiv, 2020.04. 24.014852, 2020
2020
Reference and taxonomy based methods for classification and abundance estimation of organisms in metagenomic samples
VC Piro
2018
Desenvolvimento da ferramenta para finalização de montagens de genomas in silico-FGAP
VC Piro
2014
JFINISHER finalizador de montagem e editor de sequências biológicas
VC Piro
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