Moreno Zolfo
Moreno Zolfo
Dep. of Life Science and Technology, Tokyo Institute of Technology
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Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle
E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ...
Cell 176 (3), 649-662. e20, 2019
Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome
P Ferretti, E Pasolli, A Tett, F Asnicar, V Gorfer, S Fedi, F Armanini, ...
Cell Host & Microbe 24 (1), 133-145. e5, 2018
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ...
Nature medicine 25 (4), 667-678, 2019
Strain-level microbial epidemiology and population genomics from shotgun metagenomics
M Scholz, DV Ward, E Pasolli, T Tolio, M Zolfo, F Asnicar, DT Truong, ...
Nature Methods 13 (5), 435-438, 2016
Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling
F Asnicar, S Manara, M Zolfo, DT Truong, M Scholz, F Armanini, P Ferrretti, ...
mSystems 2 (1), e00164-16, 2017
Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission
S Duranti, GA Lugli, L Mancabelli, F Armanini, F Turroni, K James, ...
Microbiome 5 (1), 66, 2017
The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations
A Tett, KD Huang, F Asnicar, H Fehlner-Peach, E Pasolli, N Karcher, ...
Cell Host & Microbe 26 (5), 577-578, 2019
Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants
DV Ward, M Scholz, M Zolfo, DH Taft, KR Schibler, A Tett, N Segata, ...
Cell Reports 14 (12), 2912-2924, 2016
Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis
A Tett, E Pasolli, S Farina, DT Truong, F Asnicar, M Zolfo, F Beghini, ...
NPJ biofilms and microbiomes 3 (1), 1-12, 2017
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ...
eLife 10, e65088, 2021
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ...
Nature Communications 11 (1), 1-10, 2020
MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples
M Zolfo, A Tett, O Jousson, C Donati, N Segata
Nucleic acids research 45 (2), e7-e7, 2016
Uncovering oral Neisseria tropism and persistence using metagenomic sequencing
C Donati, M Zolfo, D Albanese, DT Truong, F Asnicar, V Iebba, D Cavalieri, ...
Nature microbiology 1 (7), 1-9, 2016
Longitudinal survey of microbiome associated with particulate matter in a megacity
N Qin, P Liang, C Wu, G Wang, Q Xu, X Xiong, T Wang, M Zolfo, N Segata, ...
Genome Biology 21 (1), 1-11, 2020
Detecting contamination in viromes using ViromeQC
M Zolfo, F Pinto, F Asnicar, P Manghi, A Tett, FD Bushman, N Segata
Nature biotechnology 37 (12), 1408-1412, 2019
Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species
S Manara, F Asnicar, F Beghini, D Bazzani, F Cumbo, M Zolfo, E Nigro, ...
Genome Biology 20 (1), 1-16, 2019
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
N Karcher, E Pasolli, F Asnicar, KD Huang, A Tett, S Manara, F Armanini, ...
Genome Biology 21 (1), 1-27, 2020
Profiling microbial strains in urban environments using metagenomic sequencing data
M Zolfo, F Asnicar, P Manghi, E Pasolli, A Tett, N Segata
Biology Direct 13 (1), 9, 2018
Strong oral plaque microbiome signatures for dental implant diseases identified by strain-resolution metagenomics
P Ghensi, P Manghi, M Zolfo, F Armanini, E Pasolli, M Bolzan, A Bertelle, ...
npj Biofilms and Microbiomes 6 (1), 1-12, 2020
Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly
N Karcher, E Nigro, M Punčochář, A Blanco-Míguez, M Ciciani, P Manghi, ...
Genome Biology 22 (1), 1-24, 2021
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