José Afonso Guerra-Assunção
Title
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Year
The zebrafish reference genome sequence and its relationship to the human genome
K Howe, MD Clark, CF Torroja, J Torrance, C Berthelot, M Muffato, ...
Nature 496 (7446), 498-503, 2013
29142013
Mouse genomic variation and its effect on phenotypes and gene regulation
TM Keane, L Goodstadt, P Danecek, MA White, K Wong, B Yalcin, ...
Nature 477 (7364), 289-294, 2011
12692011
The BioMart community portal: an innovative alternative to large, centralized data repositories
D Smedley, S Haider, S Durinck, L Pandini, P Provero, J Allen, O Arnaiz, ...
Nucleic acids research 43 (W1), W589-W598, 2015
5542015
A robust SNP barcode for typing Mycobacterium tuberculosis complex strains
F Coll, R McNerney, JA Guerra-Assunção, JR Glynn, J Perdigao, ...
Nature communications 5 (1), 1-5, 2014
3732014
Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences
F Coll, R McNerney, MD Preston, JA Guerra-Assunção, A Warry, ...
Genome medicine 7 (1), 1-10, 2015
2642015
Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area
JA Guerra-Assunção, AC Crampin, R Houben, T Mzembe, K Mallard, ...
Elife 4, e05166, 2015
1772015
Recurrence due to Relapse or Reinfection With Mycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a …
JA Guerra-Assunção, RMGJ Houben, AC Crampin, T Mzembe, K Mallard, ...
The Journal of infectious diseases 211 (7), 1154-1163, 2015
1362015
Recurrent mTORC1-activating RRAGC mutations in follicular lymphoma
J Okosun, RL Wolfson, J Wang, S Araf, L Wilkins, BM Castellano, ...
Nature genetics 48 (2), 183-188, 2016
1332016
Integrated analysis of microRNA and mRNA expression and association with HIF binding reveals the complexity of microRNA expression regulation under hypoxia
C Camps, HK Saini, DR Mole, H Choudhry, M Reczko, ...
Molecular cancer 13 (1), 1-21, 2014
1162014
PolyTB: a genomic variation map for Mycobacterium tuberculosis
F Coll, M Preston, JA Guerra-Assunção, G Hill-Cawthorn, D Harris, ...
Tuberculosis 94 (3), 346-354, 2014
852014
Whole genome sequencing shows a low proportion of tuberculosis disease is attributable to known close contacts in rural Malawi
JR Glynn, JA Guerra-Assunção, RMGJ Houben, L Sichali, T Mzembe, ...
PloS one 10 (7), e0132840, 2015
752015
Genome-wide saturation mutagenesis of Burkholderia pseudomallei K96243 predicts essential genes and novel targets for antimicrobial development
MG Moule, CM Hemsley, Q Seet, JA Guerra-Assunção, J Lim, ...
MBio 5 (1), 2014
712014
MapMi: automated mapping of microRNA loci
JA Guerra-Assunção, AJ Enright
BMC bioinformatics 11 (1), 1-7, 2010
712010
Spatial heterogeneity of the T cell receptor repertoire reflects the mutational landscape in lung cancer
K Joshi, MR de Massy, M Ismail, JL Reading, I Uddin, A Woolston, ...
Nature medicine 25 (10), 1549-1559, 2019
642019
Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations
AM Abdallah, GA Hill-Cawthorne, TD Otto, F Coll, JA Guerra-Assunção, ...
Scientific reports 5 (1), 1-15, 2015
582015
Large-scale analysis of microRNA evolution
JA Guerra-Assunção, AJ Enright
BMC genomics 13 (1), 1-12, 2012
542012
Extent, causes, and consequences of small RNA expression variation in human adipose tissue
L Parts, ÅK Hedman, S Keildson, AJ Knights, C Abreu-Goodger, ...
PLoS Genet 8 (5), e1002704, 2012
502012
Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data
B Sobkowiak, JR Glynn, RMGJ Houben, K Mallard, JE Phelan, ...
BMC genomics 19 (1), 1-15, 2018
402018
A blood pressure-associated variant of the SLC39A8 gene influences cellular cadmium accumulation and toxicity
R Zhang, K Witkowska, J Afonso Guerra-Assunção, M Ren, FL Ng, ...
Human molecular genetics 25 (18), 4117-4126, 2016
312016
Cathepsin-L can resist lysis by human serum in Trypanosoma brucei brucei
S Alsford, RB Currier, JA Guerra-Assuncao, TG Clark, D Horn
PLoS Pathog 10 (5), e1004130, 2014
292014
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Articles 1–20