Laure Apothéloz-Perret-Gentil
Laure Apothéloz-Perret-Gentil
Université of Geneva, ID-Gene ecodiagnostics
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The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems
J Pawlowski, M Kelly-Quinn, F Altermatt, L Apothéloz-Perret-Gentil, P Beja, ...
Science of the Total Environment 637, 1295-1310, 2018
Environmental monitoring: inferring the diatom index from next-generation sequencing data
JA Visco, L Apothéloz-Perret-Gentil, A Cordonier, P Esling, L Pillet, ...
Environmental science & technology 49 (13), 7597-7605, 2015
Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap
T Cordier, L Alonso‐Sáez, L Apothéloz‐Perret‐Gentil, E Aylagas, ...
Molecular Ecology 30 (13), 2937-2958, 2021
Environmental DNA: What's behind the term? Clarifying the terminology and recommendations for its future use in biomonitoring
J Pawlowski, L Apothéloz‐Perret‐Gentil, F Altermatt
Molecular Ecology 29 (22), 4258-4264, 2020
Taxonomy‐free molecular diatom index for high‐throughput eDNA biomonitoring
L Apothéloz‐Perret‐Gentil, A Cordonier, F Straub, J Iseli, P Esling, ...
Molecular ecology resources 17 (6), 1231-1242, 2017
Protist metabarcoding and environmental biomonitoring: time for change
J Pawlowski, F Lejzerowicz, L Apotheloz-Perret-Gentil, J Visco, P Esling
European Journal of Protistology 55, 12-25, 2016
Embracing environmental genomics and machine learning for routine biomonitoring
T Cordier, A Lanzén, L Apothéloz-Perret-Gentil, T Stoeck, J Pawlowski
Trends in microbiology 27 (5), 387-397, 2019
Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
J Pawlowski, K Bruce, K Panksep, FI Aguirre, S Amalfitano, ...
Science of the Total Environment 818, 151783, 2022
SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data
Y Dufresne, F Lejzerowicz, LA Perret-Gentil, J Pawlowski, T Cordier
BMC bioinformatics 20, 1-6, 2019
Multi-marker eDNA metabarcoding survey to assess the environmental impact of three offshore gas platforms in the North Adriatic Sea (Italy)
T Cordier, F Frontalini, K Cermakova, L Apothéloz-Perret-Gentil, M Treglia, ...
Marine environmental research 146, 24-34, 2019
Diatom DNA metabarcoding for ecological assessment: Comparison among bioinformatics pipelines used in six European countries reveals the need for standardization
B Bailet, L Apothéloz-Perret-Gentil, A Baričević, T Chonova, A Franc, ...
Science of the Total Environment 745, 140948, 2020
Benthic foraminiferal metabarcoding and morphology-based assessment around three offshore gas platforms: Congruence and complementarity
F Frontalini, T Cordier, E Balassi, EA Du Châtelet, K Cermakova, ...
Environment international 144, 106049, 2020
Monitoring the ecological status of rivers with diatom eDNA metabarcoding: A comparison of taxonomic markers and analytical approaches for the inference of a molecular diatom index
L Apothéloz‐Perret‐Gentil, A Bouchez, T Cordier, A Cordonier, ...
Molecular Ecology 30 (13), 2959-2968, 2021
Environmental DNA applications for biomonitoring and bioassessment in aquatic ecosystems
J Pawlowski, L Apothéloz-Perret-Gentil, E Mächler, F Altermatt
Environmental Studies, 2020
Benthic monitoring of oil and gas offshore platforms in the North Sea using environmental DNA metabarcoding
F Mauffrey, T Cordier, L Apothéloz‐Perret‐Gentil, K Cermakova, T Merzi, ...
Molecular Ecology 30 (13), 3007-3022, 2021
Eukaryotic biodiversity and spatial patterns in the Clarion-Clipperton Zone and other abyssal regions: Insights from sediment DNA and RNA metabarcoding
F Lejzerowicz, AJ Gooday, I Barrenechea Angeles, T Cordier, R Morard, ...
Frontiers in Marine Science 8, 671033, 2021
Taxonomic revision of freshwater foraminifera with the description of two new agglutinated species and genera
F Siemensma, L Apothéloz-Perret-Gentil, M Holzmann, S Clauss, ...
European Journal of Protistology 60, 28-44, 2017
Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: the SYNAQUA French-Swiss program
E Lefrançois, L Apothéloz-Perret-Gentil, P Blancher, S Botreau, ...
Environmental Science and Pollution Research 25 (34), 33858-33866, 2018
Molecular evidence for Lessepsian invasion of Soritids (larger symbiont bearing benthic foraminifera)
G Merkado, M Holzmann, L Apothéloz-Perret-Gentil, J Pawlowski, U Abdu, ...
PLoS One 8 (10), e77725, 2013
Testing different (e) DNA metabarcoding approaches to assess aquatic oligochaete diversity and the biological quality of sediments
R Vivien, L Apothéloz-Perret-Gentil, J Pawlowski, I Werner, BJD Ferrari
Ecological Indicators 106, 105453, 2019
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