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Sumitabha Brahmachari
Sumitabha Brahmachari
Center for Theoretical Biological Physics, Rice University
Verified email at rice.edu - Homepage
Title
Cited by
Cited by
Year
3D genomics across the tree of life reveals condensin II as a determinant of architecture type
C Hoencamp, O Dudchenko, AMO Elbatsh, S Brahmachari, ...
Science 372 (6545), 984-989, 2021
1912021
Chromosome disentanglement driven via optimal compaction of loop-extruded brush structures
S Brahmachari, JF Marko
Proceedings of the National Academy of Sciences 116 (50), 24956-24965, 2019
512019
Supercoiling DNA locates mismatches
A Dittmore, S Brahmachari, Y Takagi, JF Marko, KC Neuman
Physical review letters 119 (14), 147801, 2017
302017
Shaping the genome via lengthwise compaction, phase separation, and lamina adhesion
S Brahmachari, VG Contessoto, M Di Pierro, JN Onuchic
Nucleic Acids Research 50 (8), 4258-4271, 2022
282022
DNA supercoiling-mediated collective behavior of co-transcribing RNA polymerases
S Tripathi, S Brahmachari, JN Onuchic, H Levine
Nucleic acids research 50 (3), 1269-1279, 2022
242022
Coarse-grained modelling of DNA plectoneme pinning in the presence of base-pair mismatches
PR Desai, S Brahmachari, JF Marko, S Das, KC Neuman
Nucleic acids research 48 (19), 10713-10725, 2020
222020
Torque and buckling in stretched intertwined double-helix DNAs
S Brahmachari, JF Marko
Physical Review E 95 (5), 052401, 2017
182017
Defect-facilitated buckling in supercoiled double-helix DNA
S Brahmachari, A Dittmore, Y Takagi, KC Neuman, JF Marko
Physical Review E 97 (2), 022416, 2018
152018
DNA mechanics and topology
S Brahmachari, JF Marko
Biomechanics in Oncology, 11-39, 2018
102018
Temporally correlated active forces drive segregation and enhanced dynamics in chromosome polymers
S Brahmachari, T Markovich, FC MacKintosh, JN Onuchic
PRX Life 2 (3), 033003, 2024
9*2024
Nucleation of multiple buckled structures in intertwined DNA double helices
S Brahmachari, KH Gunn, RD Giuntoli, A Mondragón, JF Marko
Physical review letters 119 (18), 188103, 2017
92017
PyMEGABASE: predicting cell-type-specific structural annotations of chromosomes using the epigenome
E Dodero-Rojas, MF Mello, S Brahmachari, ABO Junior, VG Contessoto, ...
Journal of Molecular Biology 435 (15), 168180, 2023
62023
Structural reorganization and relaxation dynamics of axially stressed chromosomes
BS Ruben, S Brahmachari, VG Contessoto, RR Cheng, ABO Junior, ...
Biophysical Journal 122 (9), 1633-1645, 2023
42023
Nucleosomes play a dual role in regulating transcription dynamics
S Brahmachari, S Tripathi, JN Onuchic, H Levine
Proceedings of the National Academy of Sciences 121 (28), e2319772121, 2024
2*2024
Compaction-mediated segregation of partly replicated bacterial chromosome
S Brahmachari, AB Oliveira Jr, MF Mello, VG Contessoto, JN Onuchic
bioRxiv, 2024.07. 27.604869, 2024
2024
Measurement of the torque in braided DNAs using a thermodynamic Maxwell relation
B Xiao, S Brahmachari, Y Liu, K Ding, JF Marko
bioRxiv, 2020.02. 07.938209, 2020
2020
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