| The Genomes of Oryza sativa: A History of Duplications J Yu, J Wang, W Lin, S Li, H Li, J Zhou, P Ni, W Dong, S Hu, C Zeng, ... PLoS biology 3 (2), e38, 2005 | 1030 | 2005 |
| Integrated proteogenomic characterization of human high-grade serous ovarian cancer H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ... Cell 166 (3), 755-765, 2016 | 950 | 2016 |
| Co-expression of CD39 and CD103 identifies tumor-reactive CD8 T cells in human solid tumors T Duhen, R Duhen, R Montler, J Moses, T Moudgil, NF De Miranda, ... Nature communications 9 (1), 2724, 2018 | 775 | 2018 |
| Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ... Cell 177 (4), 1035-1049. e19, 2019 | 617 | 2019 |
| Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983. e31, 2019 | 496 | 2019 |
| Temporal proteome and lipidome profiles reveal hepatitis C virus-associated reprogramming of hepatocellular metabolism and bioenergetics DL Diamond, AJ Syder, JM Jacobs, CM Sorensen, KA Walters, SC Proll, ... PLoS pathogens 6 (1), e1000719, 2010 | 456 | 2010 |
| Proteogenomic and metabolomic characterization of human glioblastoma LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ... Cancer cell 39 (4), 509-528. e20, 2021 | 447 | 2021 |
| Proteogenomic characterization of endometrial carcinoma Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ... Cell 180 (4), 729-748. e26, 2020 | 358 | 2020 |
| Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy K Krug, EJ Jaehnig, S Satpathy, L Blumenberg, A Karpova, M Anurag, ... Cell 183 (5), 1436-1456. e31, 2020 | 355 | 2020 |
| Impact of dietary resistant starch on the human gut microbiome, metaproteome, and metabolome TV Maier, M Lucio, LH Lee, NC VerBerkmoes, CJ Brislawn, J Bernhardt, ... MBio 8 (5), 10.1128/mbio. 01343-17, 2017 | 298 | 2017 |
| Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics BJM Webb-Robertson, HK Wiberg, MM Matzke, JN Brown, J Wang, ... Journal of proteome research 14 (5), 1993-2001, 2015 | 292 | 2015 |
| Challenges in biomarker discovery: combining expert insights with statistical analysis of complex omics data JE McDermott, J Wang, H Mitchell, BJ Webb-Robertson, R Hafen, ... Expert opinion on medical diagnostics 7 (1), 37-51, 2013 | 255 | 2013 |
| Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma C Huang, L Chen, SR Savage, RV Eguez, Y Dou, Y Li, ... Cancer cell 39 (3), 361-379. e16, 2021 | 245 | 2021 |
| Accurate prediction of secreted substrates and identification of a conserved putative secretion signal for type III secretion systems R Samudrala, F Heffron, JE McDermott PLoS pathogens 5 (4), e1000375, 2009 | 243 | 2009 |
| Molecular transducers of physical activity consortium (MoTrPAC): mapping the dynamic responses to exercise JA Sanford, CD Nogiec, ME Lindholm, JN Adkins, D Amar, S Dasari, ... Cell 181 (7), 1464-1474, 2020 | 202 | 2020 |
| Coordinated Regulation of Virulence during Systemic Infection of Salmonella enterica Serovar Typhimurium H Yoon, JE McDermott, S Porwollik, M McClelland, F Heffron PLoS pathogens 5 (2), e1000306, 2009 | 163 | 2009 |
| Proteome profiling outperforms transcriptome profiling for coexpression based gene function prediction J Wang, Z Ma, SA Carr, P Mertins, H Zhang, Z Zhang, DW Chan, MJC Ellis, ... Molecular & Cellular Proteomics 16 (1), 121-134, 2017 | 147 | 2017 |
| Discovery of Novel Secreted Virulence Factors from Salmonella enterica Serovar Typhimurium by Proteomic Analysis of Culture Supernatants GS Niemann, RN Brown, JK Gustin, A Stufkens, AS Shaikh-Kidwai, J Li, ... Infection and immunity 79 (1), 33-43, 2011 | 147 | 2011 |
| Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway T Shi, M Niepel, JE McDermott, Y Gao, CD Nicora, WB Chrisler, ... Science Signaling 9 (436), rs6-rs6, 2016 | 145 | 2016 |
| Computational prediction of type III and IV secreted effectors in gram-negative bacteria JE McDermott, A Corrigan, E Peterson, C Oehmen, G Niemann, ... Infection and immunity 79 (1), 23-32, 2011 | 140 | 2011 |
Katrina WatersPacific Northwest National LaboratoryVerified email at pnnl.gov
