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Alan Mitchell Durham
Alan Mitchell Durham
Computer Science Department, Universidade de São Paulo
Verified email at usp.br
Title
Cited by
Cited by
Year
Molecular Characterization of Mycobacterium massiliense and Mycobacterium bolletii in Isolates Collected from Outbreaks of Infections after Laparoscopic …
C Viana-Niero, KVB Lima, ML Lopes, MC da Silva Rabello, LR Marsola, ...
Journal of clinical microbiology 46 (3), 850-855, 2008
1912008
Reliable identification of mycobacterial species by PCR-restriction enzyme analysis (PRA)-hsp65 in a reference laboratory and elaboration of a sequence-based extended algorithm …
E Chimara, L Ferrazoli, SYM Ueky, MC Martins, AM Durham, RD Arbeit, ...
BMC microbiology 8 (1), 1-12, 2008
1872008
A transcriptome analysis of the Aedes aegypti vitellogenic fat body
FM Feitosa, E Calvo, EF Merino, AM Durham, AA James, AG de Bianchi, ...
Journal of Insect Science 6 (1), 6, 2006
1362006
DNA Microarray-Based Genome Comparison of a Pathogenic and a Nonpathogenic Strain of Xylella fastidiosa Delineates Genes Important for Bacterial Virulence
T Koide, PA Zaini, LM Moreira, RZN Vêncio, AY Matsukuma, AM Durham, ...
Journal of Bacteriology 186 (16), 5442-5449, 2004
982004
Computational methods in noncoding RNA research
A Machado-Lima, HA Del Portillo, AM Durham
Journal of mathematical biology 56, 15-49, 2008
902008
Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop
GM Souza, MA Van Sluys, CG Lembke, H Lee, GRA Margarido, CT Hotta, ...
GigaScience 8 (12), giz129, 2019
812019
EGene: a configurable pipeline generation system for automated sequence analysis
AM Durham, AY Kashiwabara, FTG Matsunaga, PH Ahagon, F Rainone, ...
Bioinformatics 21 (12), 2812-2813, 2005
612005
Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization
KH Ling, MA Rajandream, P Rivailler, A Ivens, SJ Yap, AMBN Madeira, ...
Genome research 17 (3), 311-319, 2007
602007
Non-coding transcription characterization and annotation: a guide and web resource for non-coding RNA databases
AR Paschoal, V Maracaja-Coutinho, JC Setubal, ZLP Simões, ...
RNA biology 9 (3), 274-282, 2012
522012
Extense variant gene family repertoire overlap in Western Amazon Plasmodium falciparum isolates
L Albrecht, EF Merino, EHE Hoffmann, MU Ferreira, ...
Molecular and biochemical parasitology 150 (2), 157-165, 2006
502006
TRAP: automated classification, quantification and annotation of tandemly repeated sequences
TJP Sobreira, AM Durham, A Gruber
Bioinformatics 22 (3), 361-362, 2006
472006
Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma
P Severino, LS Oliveira, FM Andreghetto, N Torres, O Curioni, PM Cury, ...
BMC medical genomics 8, 1-15, 2015
442015
Multi-character population study of the vir subtelomeric multigene superfamily of Plasmodium vivax, a major human malaria parasite
EF Merino, C Fernandez-Becerra, AM Durham, JE Ferreira, VF Tumilasci, ...
Molecular and biochemical parasitology 149 (1), 10-16, 2006
402006
Characterization of SCAR markers of Eimeria spp. of domestic fowl and construction of a public relational database (The Eimeria SCARdb)
S Fernandez, AM Katsuyama, AY Kashiwabara, AMBN Madeira, ...
FEMS microbiology letters 238 (1), 183-188, 2004
392004
GenSeed-HMM: A Tool for Progressive Assembly Using Profile HMMs as Seeds and its Application in Alpavirinae Viral Discovery from Metagenomic Data
JMP Alves, AL de Oliveira, TOM Sandberg, JL Moreno-Gallego, ...
Frontiers in Microbiology 7, 269, 2016
372016
A comparative transcriptome analysis reveals expression profiles conserved across three Eimeria spp. of domestic fowl and associated with multiple developmental stages
J Novaes, LTLD Rangel, M Ferro, RY Abe, APS Manha, JCM de Mello, ...
International journal for parasitology 42 (1), 39-48, 2012
352012
Noncoding RNAs databases: current status and trends
V Maracaja-Coutinho, AR Paschoal, JC Caris-Maldonado, PV Borges, ...
Computational biology of non-coding RNA: methods and protocols, 251-285, 2019
322019
Use of profile hidden Markov models in viral discovery: Current insights
A Reyes, J Marcelo P Alves, AM Durham, A Gruber
Advances in Genomics and Genetics, 29-45, 2017
222017
A framework for run-time systems and its visual programming language
AM Durham, RE Johnson
Proceedings of the 11th ACM SIGPLAN conference on Object-oriented …, 1996
221996
CodAn: predictive models for precise identification of coding regions in eukaryotic transcripts
PG Nachtigall, AY Kashiwabara, AM Durham
Briefings in Bioinformatics 22 (3), bbaa045, 2021
202021
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