Alan Mitchell Durham
Alan Mitchell Durham
Computer Science Department, Universidade de São Paulo
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Molecular Characterization of Mycobacterium massiliense and Mycobacterium bolletii in Isolates Collected from Outbreaks of Infections after Laparoscopic …
C Viana-Niero, KVB Lima, ML Lopes, MC da Silva Rabello, LR Marsola, ...
Journal of clinical microbiology 46 (3), 850-855, 2008
Reliable identification of mycobacterial species by PCR-restriction enzyme analysis (PRA)-hsp65 in a reference laboratory and elaboration of a sequence-based extended algorithm …
E Chimara, L Ferrazoli, SYM Ueky, MC Martins, AM Durham, RD Arbeit, ...
BMC microbiology 8 (1), 1-12, 2008
A transcriptome analysis of the Aedes aegypti vitellogenic fat body
FM Feitosa, E Calvo, EF Merino, AM Durham, AA James, AG de Bianchi, ...
Journal of Insect Science 6 (1), 6, 2006
DNA Microarray-Based Genome Comparison of a Pathogenic and a Nonpathogenic Strain of Xylella fastidiosa Delineates Genes Important for Bacterial Virulence
T Koide, PA Zaini, LM Moreira, RZN Vêncio, AY Matsukuma, AM Durham, ...
Journal of Bacteriology 186 (16), 5442-5449, 2004
Computational methods in noncoding RNA research
A Machado-Lima, HA Del Portillo, AM Durham
Journal of mathematical biology 56, 15-49, 2008
Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop
GM Souza, MA Van Sluys, CG Lembke, H Lee, GRA Margarido, CT Hotta, ...
GigaScience 8 (12), giz129, 2019
EGene: a configurable pipeline generation system for automated sequence analysis
AM Durham, AY Kashiwabara, FTG Matsunaga, PH Ahagon, F Rainone, ...
Bioinformatics 21 (12), 2812-2813, 2005
Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization
KH Ling, MA Rajandream, P Rivailler, A Ivens, SJ Yap, AMBN Madeira, ...
Genome research 17 (3), 311-319, 2007
Non-coding transcription characterization and annotation: a guide and web resource for non-coding RNA databases
AR Paschoal, V Maracaja-Coutinho, JC Setubal, ZLP Simões, ...
RNA biology 9 (3), 274-282, 2012
Extense variant gene family repertoire overlap in Western Amazon Plasmodium falciparum isolates
L Albrecht, EF Merino, EHE Hoffmann, MU Ferreira, ...
Molecular and biochemical parasitology 150 (2), 157-165, 2006
TRAP: automated classification, quantification and annotation of tandemly repeated sequences
TJP Sobreira, AM Durham, A Gruber
Bioinformatics 22 (3), 361-362, 2006
Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma
P Severino, LS Oliveira, FM Andreghetto, N Torres, O Curioni, PM Cury, ...
BMC medical genomics 8, 1-15, 2015
Multi-character population study of the vir subtelomeric multigene superfamily of Plasmodium vivax, a major human malaria parasite
EF Merino, C Fernandez-Becerra, AM Durham, JE Ferreira, VF Tumilasci, ...
Molecular and biochemical parasitology 149 (1), 10-16, 2006
Characterization of SCAR markers of Eimeria spp. of domestic fowl and construction of a public relational database (The Eimeria SCARdb)
S Fernandez, AM Katsuyama, AY Kashiwabara, AMBN Madeira, ...
FEMS microbiology letters 238 (1), 183-188, 2004
GenSeed-HMM: A Tool for Progressive Assembly Using Profile HMMs as Seeds and its Application in Alpavirinae Viral Discovery from Metagenomic Data
JMP Alves, AL de Oliveira, TOM Sandberg, JL Moreno-Gallego, ...
Frontiers in Microbiology 7, 269, 2016
A comparative transcriptome analysis reveals expression profiles conserved across three Eimeria spp. of domestic fowl and associated with multiple developmental stages
J Novaes, LTLD Rangel, M Ferro, RY Abe, APS Manha, JCM de Mello, ...
International journal for parasitology 42 (1), 39-48, 2012
Noncoding RNAs databases: current status and trends
V Maracaja-Coutinho, AR Paschoal, JC Caris-Maldonado, PV Borges, ...
Computational biology of non-coding RNA: methods and protocols, 251-285, 2019
Use of profile hidden Markov models in viral discovery: Current insights
A Reyes, J Marcelo P Alves, AM Durham, A Gruber
Advances in Genomics and Genetics, 29-45, 2017
A framework for run-time systems and its visual programming language
AM Durham, RE Johnson
Proceedings of the 11th ACM SIGPLAN conference on Object-oriented …, 1996
CodAn: predictive models for precise identification of coding regions in eukaryotic transcripts
PG Nachtigall, AY Kashiwabara, AM Durham
Briefings in Bioinformatics 22 (3), bbaa045, 2021
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