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Automated phylogenetic detection of recombination using a genetic algorithm
SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost
Molecular biology and evolution 23 (10), 1891-1901, 2006
GARD: a genetic algorithm for recombination detection
SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost
Bioinformatics 22 (24), 3096-3098, 2006
Highly precise measurement of HIV DNA by droplet digital PCR
MC Strain, SM Lada, T Luong, SE Rought, S Gianella, VH Terry, CA Spina, ...
PloS one 8 (4), e55943, 2013
An in-depth comparison of latent HIV-1 reactivation in multiple cell model systems and resting CD4+ T cells from aviremic patients
CA Spina, J Anderson, NM Archin, A Bosque, J Chan, M Famiglietti, ...
PLoS pathogens 9 (12), e1003834, 2013
Hollow porous particles in metered dose inhalers
LA Dellamary, TE Tarara, DJ Smith, CH Woelk, A Adractas, ML Costello, ...
Pharmaceutical research 17 (2), 168-174, 2000
Genetic constraints and the adaptive evolution of rabies virus in nature
EC Holmes, CH Woelk, R Kassis, H Bourhy
Virology 292 (2), 247-257, 2002
Phylogenetic evidence for adaptive evolution of dengue viruses in nature
SS Twiddy, CH Woelk, EC Holmes
Journal of General Virology 83 (7), 1679-1689, 2002
Gene networks specific for innate immunity define post-traumatic stress disorder
MS Breen, AX Maihofer, SJ Glatt, DS Tylee, SD Chandler, MT Tsuang, ...
Molecular psychiatry 20 (12), 1538-1545, 2015
Reduced positive selection in vector-borne RNA viruses
CH Woelk, EC Holmes
Molecular biology and evolution 19 (12), 2333-2336, 2002
Comparative study of adaptive molecular evolution in different human immunodeficiency virus groups and subtypes
M Choisy, CH Woelk, JF Guégan, DL Robertson
Journal of Virology 78 (4), 1962-1970, 2004
A public health model for the molecular surveillance of HIV transmission in San Diego, California
DM Smith, S May, S Tweeten, L Drumright, ME Pacold, SLK Pond, ...
AIDS (London, England) 23 (2), 225, 2009
Positively charged amino acid substitutions in the E2 envelope glycoprotein are associated with the emergence of Venezuelan equine encephalitis virus
AC Brault, AM Powers, EC Holmes, CH Woelk, SC Weaver
Journal of virology 76 (4), 1718-1730, 2002
Microarray truths and consequences
R Sasik, CH Woelk, J Corbeil
Journal of molecular endocrinology 33 (1), 1-9, 2004
Variable immune-driven natural selection in the attachment (G) glycoprotein of respiratory syncytial virus (RSV)
CH Woelk, EC Holmes
Journal of molecular evolution 52 (2), 182-192, 2001
Evolution of the interferon alpha gene family in eutherian mammals
CH Woelk, SDW Frost, DD Richman, PE Higley, SLK Pond
Gene 397 (1-2), 38-50, 2007
Interferon gene expression following HIV type 1 infection of monocyte-derived macrophages
CH Woelk, F Ottones, CR Plotkin, P Du, CD Royer, SE Rought, J Lozach, ...
AIDS Research & Human Retroviruses 20 (11), 1210-1222, 2004
The effect of cell subset isolation method on gene expression in leukocytes
N Beliakova‐Bethell, M Massanella, C White, SM Lada, P Du, F Vaida, ...
Cytometry Part A 85 (1), 94-104, 2014
Evidence for the non-quasispecies evolution of RNA viruses
GM Jenkins, M Worobey, CH Woelk, EC Holmes
Molecular biology and evolution 18 (6), 987-994, 2001
Gene expression analysis of TIL rich HPV-driven head and neck tumors reveals a distinct B-cell signature when compared to HPV independent tumors
O Wood, J Woo, G Seumois, N Savelyeva, KJ McCann, D Singh, T Jones, ...
Oncotarget 7 (35), 56781, 2016
Blood‐based gene‐expression predictors of PTSD risk and resilience among deployed marines: A pilot study
SJ Glatt, DS Tylee, SD Chandler, J Pazol, CM Nievergelt, CH Woelk, ...
American Journal of Medical Genetics Part B: Neuropsychiatric Genetics 162 …, 2013
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