Sarala M Wimalaratne
Sarala M Wimalaratne
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The systems biology graphical notation
N Le Novere, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ...
Nature biotechnology 27 (8), 735-741, 2009
8922009
The systems biology graphical notation
N Le Novere, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ...
Nature biotechnology 27 (8), 735-741, 2009
8922009
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935-942, 2010
6442010
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935-942, 2010
6442010
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935-942, 2010
6442010
BioModels: ten-year anniversary
V Chelliah, N Juty, I Ajmera, R Ali, M Dumousseau, M Glont, M Hucka, ...
Nucleic acids research 43 (D1), D542-D548, 2015
2712015
Controlled vocabularies and semantics in systems biology
M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ...
Molecular systems biology 7 (1), 543, 2011
2592011
The EBI RDF platform: linked open data for the life sciences
S Jupp, J Malone, J Bolleman, M Brandizi, M Davies, L Garcia, A Gaulton, ...
Bioinformatics 30 (9), 1338-1339, 2014
2492014
CellML metadata standards, associated tools and repositories
DA Beard, R Britten, MT Cooling, A Garny, MDB Halstead, PJ Hunter, ...
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2009
862009
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ...
PLoS biology 15 (6), e2001414, 2017
822017
BioModels: content, features, functionality, and use
N Juty, R Ali, M Glont, S Keating, N Rodriguez, MJ Swat, SM Wimalaratne, ...
CPT: pharmacometrics & systems pharmacology 4 (2), 55-68, 2015
772015
Integrating systems biology models and biomedical ontologies
R Hoehndorf, M Dumontier, JH Gennari, S Wimalaratne, B De Bono, ...
BMC systems biology 5 (1), 1-16, 2011
752011
A common layer of interoperability for biomedical ontologies based on OWL EL
R Hoehndorf, M Dumontier, A Oellrich, S Wimalaratne, ...
Bioinformatics 27 (7), 1001-1008, 2011
502011
BioModels: expanding horizons to include more modelling approaches and formats
M Glont, TVN Nguyen, M Graesslin, R Hälke, R Ali, J Schramm, ...
Nucleic Acids Research 46 (D1), D1248-D1253, 2018
462018
The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions
B De Bono, R Hoehndorf, S Wimalaratne, G Gkoutos, P Grenon
BMC Research Notes 4 (1), 1-15, 2011
442011
Uniform resolution of compact identifiers for biomedical data
SM Wimalaratne, N Juty, J Kunze, G Janée, JA McMurry, N Beard, ...
Scientific data 5 (1), 1-8, 2018
382018
Pharmacometrics Markup Language (PharmML): opening new perspectives for model exchange in drug development
MJ Swat, S Moodie, SM Wimalaratne, NR Kristensen, M Lavielle, A Mari, ...
CPT: pharmacometrics & systems pharmacology 4 (6), 316-319, 2015
352015
Model annotation for synthetic biology: automating model to nucleotide sequence conversion
G Misirli, JS Hallinan, T Yu, JR Lawson, SM Wimalaratne, MT Cooling, ...
Bioinformatics 27 (7), 973-979, 2011
352011
A method for visualizing CellML models
SM Wimalaratne, MDB Halstead, CM Lloyd, MT Cooling, EJ Crampin, ...
Bioinformatics 25 (22), 3012-3019, 2009
232009
The health care and life sciences community profile for dataset descriptions
M Dumontier, AJG Gray, MS Marshall, V Alexiev, P Ansell, G Bader, ...
PeerJ 4, e2331, 2016
212016
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