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Carlos Rodrigues
Carlos Rodrigues
CSIRO - Australian Centre for Disease Preparedness
Verified email at csiro.au
Title
Cited by
Cited by
Year
DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability
CHM Rodrigues, DEV Pires, DB Ascher
Nucleic acids research 46 (W1), W350-W355, 2018
8442018
A structural biology community assessment of AlphaFold2 applications
M Akdel, DEV Pires, EP Pardo, J Jänes, AO Zalevsky, B Mészáros, ...
Nature Structural & Molecular Biology 29 (11), 1056-1067, 2022
3832022
mCSM-PPI2: predicting the effects of mutations on protein–protein interactions
CHM Rodrigues, Y Myung, DEV Pires, DB Ascher
Nucleic acids research 47 (W1), W338-W344, 2019
2822019
DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations
CHM Rodrigues, DEV Pires, DB Ascher
Protein Science 30 (1), 60-69, 2021
2792021
mCSM-membrane: predicting the effects of mutations on transmembrane proteins
DEV Pires, CHM Rodrigues, DB Ascher
Nucleic acids research 48 (W1), W147-W153, 2020
742020
Empirical ways to identify novel Bedaquiline resistance mutations in AtpE
M Karmakar, CHM Rodrigues, KE Holt, SJ Dunstan, J Denholm, ...
PloS one 14 (5), e0217169, 2019
642019
Structure guided prediction of Pyrazinamide resistance mutations in pncA
M Karmakar, CHM Rodrigues, K Horan, JT Denholm, DB Ascher
Scientific reports 10 (1), 1875, 2020
612020
Exploring the structural distribution of genetic variation in SARS-CoV-2 with the COVID-3D online resource
S Portelli, M Olshansky, CHM Rodrigues, EN D’Souza, Y Myung, M Silk, ...
Nature genetics 52 (10), 999-1001, 2020
602020
mCSM-AB2: guiding rational antibody design using graph-based signatures
Y Myung, CHM Rodrigues, DB Ascher, DEV Pires
Bioinformatics 36 (5), 1453-1459, 2020
542020
mmCSM-PPI: predicting the effects of multiple point mutations on protein–protein interactions
CHM Rodrigues, DEV Pires, DB Ascher
Nucleic Acids Research 49 (W1), W417-W424, 2021
452021
DDMut: predicting effects of mutations on protein stability using deep learning
Y Zhou, Q Pan, DEV Pires, CHM Rodrigues, DB Ascher
Nucleic Acids Research 51 (W1), W122-W128, 2023
382023
Combating mutations in genetic disease and drug resistance: understanding molecular mechanisms to guide drug design
ATS Albanaz, CHM Rodrigues, DEV Pires, DB Ascher
Expert opinion on drug discovery 12 (6), 553-563, 2017
282017
Computational saturation mutagenesis to predict structural consequences of systematic mutations in the beta subunit of RNA polymerase in Mycobacterium leprae
SC Vedithi, CHM Rodrigues, S Portelli, MJ Skwark, M Das, DB Ascher, ...
Computational and Structural Biotechnology Journal 18, 271-286, 2020
272020
Machine learning of ECG waveforms to improve selection for testing for asymptomatic left ventricular dysfunction
EL Potter, CHM Rodrigues, DB Ascher, WP Abhayaratna, PP Sengupta, ...
Cardiovascular Imaging 14 (10), 1904-1915, 2021
262021
Kinact: a computational approach for predicting activating missense mutations in protein kinases
CHM Rodrigues, DB Ascher, DEV Pires
Nucleic Acids Research 46 (W1), W127-W132, 2018
242018
EasyVS: a user-friendly web-based tool for molecule library selection and structure-based virtual screening
DEV Pires, WNP Veloso, YC Myung, CHM Rodrigues, M Silk, ...
Bioinformatics 36 (14), 4200-4202, 2020
222020
PDCSM-PPI: Using graph-based signatures to identify protein–protein interaction inhibitors
CHM Rodrigues, DEV Pires, DB Ascher
Journal of Chemical Information and Modeling 61 (11), 5438-5445, 2021
202021
MTR3D: identifying regions within protein tertiary structures under purifying selection
M Silk, DEV Pires, CHM Rodrigues, EN D’Souza, M Olshansky, N Thorne, ...
Nucleic Acids Research 49 (W1), W438-W445, 2021
192021
CSM‐peptides: A computational approach to rapid identification of therapeutic peptides
CHM Rodrigues, A Garg, D Keizer, DEV Pires, DB Ascher
Protein Science 31 (10), e4442, 2022
142022
CSM-toxin: A web-server for predicting protein toxicity
V Morozov, CHM Rodrigues, DB Ascher
Pharmaceutics 15 (2), 431, 2023
132023
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Articles 1–20