Carlos Rodrigues
Carlos Rodrigues
CSIRO - Australian Centre for Disease Preparedness
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DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability
CHM Rodrigues, DEV Pires, DB Ascher
Nucleic acids research 46 (W1), W350-W355, 2018
A structural biology community assessment of AlphaFold2 applications
M Akdel, DEV Pires, EP Pardo, J Jänes, AO Zalevsky, B Mészáros, ...
Nature Structural & Molecular Biology 29 (11), 1056-1067, 2022
mCSM-PPI2: predicting the effects of mutations on protein–protein interactions
CHM Rodrigues, Y Myung, DEV Pires, DB Ascher
Nucleic acids research 47 (W1), W338-W344, 2019
DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations
CHM Rodrigues, DEV Pires, DB Ascher
Protein Science 30 (1), 60-69, 2021
mCSM-membrane: predicting the effects of mutations on transmembrane proteins
DEV Pires, CHM Rodrigues, DB Ascher
Nucleic acids research 48 (W1), W147-W153, 2020
Exploring the structural distribution of genetic variation in SARS-CoV-2 with the COVID-3D online resource
S Portelli, M Olshansky, CHM Rodrigues, EN D’Souza, Y Myung, M Silk, ...
Nature genetics 52 (10), 999-1001, 2020
Structure guided prediction of Pyrazinamide resistance mutations in pncA
M Karmakar, CHM Rodrigues, K Horan, JT Denholm, DB Ascher
Scientific Reports 10 (1), 1875, 2020
Empirical ways to identify novel Bedaquiline resistance mutations in AtpE
M Karmakar, CHM Rodrigues, KE Holt, SJ Dunstan, J Denholm, ...
PloS one 14 (5), e0217169, 2019
mCSM-AB2: guiding rational antibody design using graph-based signatures
Y Myung, CHM Rodrigues, DB Ascher, DEV Pires
Bioinformatics 36 (5), 1453-1459, 2020
mmCSM-PPI: predicting the effects of multiple point mutations on protein–protein interactions
CHM Rodrigues, DEV Pires, DB Ascher
Nucleic Acids Research 49 (W1), W417-W424, 2021
Combating mutations in genetic disease and drug resistance: understanding molecular mechanisms to guide drug design
ATS Albanaz, CHM Rodrigues, DEV Pires, DB Ascher
Expert opinion on drug discovery 12 (6), 553-563, 2017
Computational saturation mutagenesis to predict structural consequences of systematic mutations in the beta subunit of RNA polymerase in Mycobacterium leprae
SC Vedithi, CHM Rodrigues, S Portelli, MJ Skwark, M Das, DB Ascher, ...
Computational and structural biotechnology journal 18, 271-286, 2020
Machine learning of ECG waveforms to improve selection for testing for asymptomatic left ventricular dysfunction
EL Potter, CHM Rodrigues, DB Ascher, WP Abhayaratna, PP Sengupta, ...
Cardiovascular Imaging 14 (10), 1904-1915, 2021
Kinact: a computational approach for predicting activating missense mutations in protein kinases
CHM Rodrigues, DB Ascher, DEV Pires
Nucleic Acids Research 46 (W1), W127-W132, 2018
EasyVS: a user-friendly web-based tool for molecule library selection and structure-based virtual screening
DEV Pires, WNP Veloso, YC Myung, CHM Rodrigues, M Silk, ...
Bioinformatics 36 (14), 4200-4202, 2020
MTR3D: identifying regions within protein tertiary structures under purifying selection
M Silk, DEV Pires, CHM Rodrigues, EN D’Souza, M Olshansky, N Thorne, ...
Nucleic Acids Research 49 (W1), W438-W445, 2021
PDCSM-PPI: Using graph-based signatures to identify protein–protein interaction inhibitors
CHM Rodrigues, DEV Pires, DB Ascher
Journal of Chemical Information and Modeling 61 (11), 5438-5445, 2021
DDMut: predicting effects of mutations on protein stability using deep learning
Y Zhou, Q Pan, DEV Pires, CHM Rodrigues, DB Ascher
Nucleic Acids Research, gkad472, 2023
Structural landscapes of PPI interfaces
CHM Rodrigues, DEV Pires, TL Blundell, DB Ascher
Briefings in Bioinformatics 23 (4), bbac165, 2022
Applying sodium carbonate extraction mass spectrometry to investigate defects in the mitochondrial respiratory chain
DRL Robinson, DH Hock, L Muellner-Wong, R Kugapreethan, B Reljic, ...
Frontiers in Cell and Developmental Biology 10, 786268, 2022
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