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Jonathan D Jou
Jonathan D Jou
E-mail confirmado em cs.duke.edu
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OSPREY 3.0: Open‐source protein redesign for you, with powerful new features
MA Hallen, JW Martin, A Ojewole, JD Jou, AU Lowegard, MS Frenkel, ...
Journal of computational chemistry 39 (30), 2494-2507, 2018
672018
Sepsis-associated acute respiratory distress syndrome in individuals of European ancestry: a genome-wide association study
B Guillen-Guio, JM Lorenzo-Salazar, SF Ma, PC Hou, ...
The Lancet Respiratory Medicine 8 (3), 258-266, 2020
492020
(Branch and Bound over): A Provable and Efficient Ensemble-Based Algorithm to Optimize Stability and Binding Affinity over Large Sequence Spaces
AA Ojewole, JD Jou, VG Fowler, BR Donald
International Conference on Research in Computational Molecular Biology, 157-172, 2017
35*2017
Longitudinal lung function and gas transfer in individuals with idiopathic pulmonary fibrosis: a genome-wide association study
RJ Allen, JM Oldham, DA Jenkins, OC Leavy, B Guillen-Guio, ...
The Lancet Respiratory Medicine 11 (1), 65-73, 2023
242023
Novel idiopathic pulmonary fibrosis susceptibility variants revealed by deep sequencing
JM Lorenzo-Salazar, SF Ma, J Jou, PC Hou, B Guillen-Guio, RJ Allen, ...
ERJ open research 5 (2), 2019
242019
LUTE (Local Unpruned Tuple Expansion): Accurate continuously flexible protein design with general energy functions and rigid-rotamer-like efficiency
MA Hallen, JD Jou, BR Donald
Biophysical Journal 112 (3), 194a, 2017
232017
BWM*: A novel, provable, ensemble-based dynamic programming algorithm for sparse approximations of computational protein design
JD Jou, S Jain, IS Georgiev, BR Donald
Journal of Computational Biology 23 (6), 413-424, 2016
232016
TYRO3: A potential therapeutic target in cancer
PL Hsu, J Jou, SJ Tsai
Experimental Biology and Medicine 244 (2), 83-99, 2019
192019
Focused neuro-otological review of superficial siderosis of the central nervous system
A Yoo, J Jou, JD Klopfenstein, JC Kattah
Frontiers in Neurology 9, 344892, 2018
172018
PCSK6 and survival in idiopathic pulmonary fibrosis
JM Oldham, RJ Allen, JM Lorenzo-Salazar, PL Molyneaux, SF Ma, ...
American Journal of Respiratory and Critical Care Medicine 207 (11), 1515-1524, 2023
132023
Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD: KRas protein-protein interface
AU Lowegard, MS Frenkel, GT Holt, JD Jou, AA Ojewole, BR Donald
PLoS Computational Biology 16 (6), e1007447, 2020
132020
Minimization-Aware Recursive K*: A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape
JD Jou, GT Holt, AU Lowegard, BR Donald
Journal of Computational Biology 27 (4), 550-564, 2020
11*2020
Artist identification for renaissance paintings
J Jou, S Agrawal
Technical report, 2011
112011
Genomic amplification of chromosome 20q13. 33 is the early biomarker for the development of sporadic colorectal carcinoma
VMH Bui, C Mettling, J Jou, HS Sun
BMC Medical Genomics 13, 1-11, 2020
102020
TIAM2S mediates serotonin homeostasis and provokes a pro-inflammatory immune microenvironment permissive for colorectal tumorigenesis
YL Chan, WC Lai, JS Chen, JTC Tseng, PC Chuang, J Jou, CT Lee, ...
Cancers 12 (7), 1844, 2020
92020
Computational analysis of energy landscapes reveals dynamic features that contribute to binding of inhibitors to CFTR-associated ligand
GT Holt, JD Jou, NP Gill, AU Lowegard, JW Martin, DR Madden, ...
The Journal of Physical Chemistry B 123 (49), 10441-10455, 2019
92019
BWM*: a novel, provable, ensemble-based dynamic programming algorithm for sparse approximations of computational protein design
JD Jou, S Jain, I Georgiev, BR Donald
International Conference on Research in Computational Molecular Biology, 154-166, 2015
72015
Evaluation of a whole‐exome sequencing pipeline and benchmarking of causal germline variant prioritizers
E Tosco‐Herrera, A Muñoz‐Barrera, D Jaspez, LA Rubio‐Rodríguez, ...
Human Mutation 43 (12), 2010-2020, 2022
62022
Central lung gene expression associates with myofibroblast features in idiopathic pulmonary fibrosis
Y Huang, R Guzy, SF Ma, CA Bonham, J Jou, JJ Schulte, JS Kim, ...
BMJ Open Respiratory Research 10 (1), e001391, 2023
22023
A critical analysis of computational protein design with sparse residue interaction graphs
S Jain, JD Jou, IS Georgiev, BR Donald
PLoS Computational Biology 13 (3), e1005346, 2017
22017
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