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José Augusto Salim
José Augusto Salim
Biodiversity Informatics Specialist at University of Campinas
E-mail confirmado em unicamp.br
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Ano
Improving predictions of protein-protein interfaces by combining amino acid-specific classifiers based on structural and physicochemical descriptors with their weighted …
FR de Moraes, IAP Neshich, I Mazoni, IH Yano, JGC Pereira, JA Salim, ...
Plos one 9 (1), e87107, 2014
102014
Computational biology tools for identifying specific ligand binding residues for novel agrochemical and drug design
I Agostinho Pena Neshich, L Nishimura, F Rogerio de Moraes, ...
Current Protein and Peptide Science 16 (8), 701-717, 2015
92015
Using Structural and Physical–Chemical Parameters to Identify, Classify, and Predict Functional Districts in Proteins—The Role of Electrostatic Potential
G Neshich, IAP Neshich, F Moraes, JA Salim, L Borro, IH Yano, I Mazoni, ...
Computational Electrostatics for Biological Applications, 227-254, 2015
42015
Biologia computacional molecular e suas aplicações na agricultura.
JG Jardine, IAP Neshich, I Mazoni, IH Yano, FR de Moraes, JA Salim, ...
Embrapa Informática Agropecuária-Capítulo em livro científico (ALICE), 2014
22014
The dynamics of knowledge about stemflow: a systematic review
KC Tonello, AG Rosa, JA Salim, CJP Correa, MT Lima
Brazilian Journal of Environmental Sciences (Online) 56 (1), 16-27, 2021
12021
A Google Sheet Add-on for Biodiversity Data Standardization and Sharing
JA Salim, A Saraiva
Biodiversity Information Science and Standards 4, e59228, 2020
12020
Study of specific nanoenvironments containing α-helices in all-α and (α+ β)+(α/β) proteins
I Mazoni, LC Borro, JG Jardine, IH Yano, JA Salim, G Neshich
PloS one 13 (7), e0200018, 2018
12018
Brazilian Plant-Pollinator Interactions Network: definition of a data standard for digitization, sharing, and aggregation of plant-pollinator interaction data
A Saraiva, J Salim, K Agostini, M Wolowski, J Silva, A Veiga, B Albertini
Biodiversity Information Science and Standards 1, e20298, 2017
12017
Aplicação de técnicas de reconhecimento de padrões usando os descritores estruturais de proteínas da base de dados do software STING para discriminação do sítio catalítico de …
JA Salim
[sn], 2015
12015
Plant-pollinator Vocabulary-a Contribution to Interaction Data Standardization
JA Salim, P Zermoglio, D Drucker, F Soares, A Saraiva, K Agostini, ...
Biodiversity Information Science and Standards 5, e75636, 2021
2021
A comparison between internal protein nanoenvironments of α-helices and β-sheets
I Mazoni, JA Salim, FR de Moraes, L Borro, G Neshich
PLoS One 15 (12), e0244315, 2020
2020
Identification of therapeutic targets for computer-based design of drugs against bacteria containing the PilT protein
G Neshich, IAP Neshich, JG Jardine, L Nishimura, I Mazoni, J Salim
US Patent 10,460,827, 2019
2019
Brazilian Network on Plant-Pollinator Interactions: an update on the initiative of a standard for plant-pollinator interactions data
JA Salim, A Saraiva, K Agostini, M Wolowski, A Veiga, J Silva, ...
Biodiversity Information Science and Standards 2, e25343, 2018
2018
Study of specific nanoenvironments containing [alfa]-helices in all-[alfa] and ([alfa]+[beta])+([alfa]/[beta]) proteins.
I Mazoni, LC Borro, JG Jardine, IH Yano, JA Salim, G Neshich
Embrapa Informática Agropecuária-Artigo em periódico indexado (ALICE), 2018
2018
Multiple structure single parameter: analysis of a single protein nano environment descriptor characterizing a shared loci on structurally aligned proteins
JA Salim, L Borro, I Mazoni, I Yano, JG Jardine, G Neshich
Bioinformatics 32 (12), 1885-1887, 2016
2016
Improving binding affinity prediction by using a rule-based model with physical-chemical and structural descriptors of the nano-environment for protein-ligand interactions.
LC BORRO, JA SALIM, I MAZONI, I YANO, JG JARDINE, G NESHICH
Embrapa Informática Agropecuária-Resumo em anais de congresso (ALICE), 2015
2015
Pathogenic prion proteins (PrP) have higher electrostatic potential pattern than normal cellular prion protein in a specific region
IAP Neshich, I Mazoni, JA Salim, FR de Moraes, L Nishimura, JG Jardine, ...
2011
Multivariate pattern of physicochemical and structural properties associated with protein-protein interfaces and its use for prediction of interface forming residues
FR de Moraes, IAP Neshich, I Mazoni, JGC Pereira, JA Salim, JG Jardine, ...
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