simon hubbard
simon hubbard
Professor of Computational Biology, University of Manchester
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Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
LDW Hillier, W Miller, E Birney, W Warren, RC Hardison, CP Ponting, ...
Nature 432 (7018), 695-716, 2004
SJ Hubbard, JM Thornton
Computer Program, Department of Biochemistry and Molecular Biology …, 1993
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
Genome sequence of red jungle fowl: Washington University School of Medicine ...
Nature 432 (7018), 717-722, 2004
The structural aspects of limited proteolysis of native proteins
SJ Hubbard
Biochimica et Biophysica Acta (BBA)-Protein Structure and Molecular …, 1998
Global translational responses to oxidative stress impact upon multiple levels of protein synthesis
D Shenton, JB Smirnova, JN Selley, K Carroll, SJ Hubbard, GD Pavitt, ...
Journal of Biological Chemistry 281 (39), 29011-29021, 2006
Molecular recognition: conformational analysis of limited proteolytic sites and serine proteinase protein inhibitors
SJ Hubbard, SF Campbell, JM Thornton
Journal of molecular biology 220 (2), 507-530, 1991
A comprehensive collection of chicken cDNAs
PE Boardman, J Sanz-Ezquerro, IM Overton, DW Burt, E Bosch, WT Fong, ...
Current biology 12 (22), 1965-1969, 2002
A systematic approach to modeling, capturing, and disseminating proteomics experimental data
CF Taylor, NW Paton, KL Garwood, PD Kirby, DA Stead, Z Yin, ...
Nature biotechnology 21 (3), 247-254, 2003
Modeling studies of the change in conformation required for cleavage of limited proteolytic sites
SJ Hubbard, F Eisenmenger, JM Thornton
Protein Science 3 (5), 757-768, 1994
Intramolecular cavities in globular proteins
SJ Hubbard, KH Gross, P Argos
Protein Engineering, Design and Selection 7 (5), 613-626, 1994
Prediction of missed cleavage sites in tryptic peptides aids protein identification in proteomics
JA Siepen, EJ Keevil, D Knight, SJ Hubbard
Journal of proteome research 6 (1), 399-408, 2007
The mzIdentML data standard for mass spectrometry-based proteomics results
AR Jones, M Eisenacher, G Mayer, O Kohlbacher, J Siepen, SJ Hubbard, ...
Molecular & Cellular Proteomics 11 (7), M111. 014381-1-M111. 014381-10, 2012
Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis
DM Soanes, I Alam, M Cornell, HM Wong, C Hedeler, NW Paton, ...
PLoS One 3 (6), e2300, 2008
The chicken as a model for large-scale analysis of vertebrate gene function
WRA Brown, SJ Hubbard, C Tickle, SA Wilson
Nature Reviews Genetics 4 (2), 87-98, 2003
Differential expression of ion channel transcripts in atrial muscle and sinoatrial node in rabbit
JO Tellez, H Dobrzynski, ID Greener, GM Graham, E Laing, H Honjo, ...
Circulation research 99 (12), 1384-1393, 2006
Cavities and packing at protein interfaces
SJ Hubbard, P Argos
Protein Science 3 (12), 2194-2206, 1994
BioMart Central Portal: an open database network for the biological community
JM Guberman, J Ai, O Arnaiz, J Baran, A Blake, R Baldock, C Chelala, ...
Database 2011, bar041, 2011
Conceptual modelling of genomic information
NW Paton, SA Khan, A Hayes, F Moussouni, A Brass, K Eilbeck, ...
Bioinformatics 16 (6), 548-557, 2000
CONSeQuence: prediction of reference peptides for absolute quantitative proteomics using consensus machine learning approaches
CE Eyers, C Lawless, DC Wedge, KW Lau, SJ Gaskell, SJ Hubbard
Molecular & Cellular Proteomics 10 (11), 2011
Assessment of conformational parameters as predictors of limited proteolytic sites in native protein structures.
SJ Hubbard, RJ Beynon, JM Thornton
Protein engineering 11 (5), 349-359, 1998
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