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James Malone
James Malone
CTO, SciBite
E-mail confirmado em scibite.com - Página inicial
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Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data
WA Kibbe, C Arze, V Felix, E Mitraka, E Bolton, G Fu, CJ Mungall, ...
Nucleic acids research 43 (D1), D1071-D1078, 2015
6192015
Modeling sample variables with an Experimental Factor Ontology
J Malone, E Holloway, T Adamusiak, M Kapushesky, J Zheng, ...
Bioinformatics 26 (8), 1112-1118, 2010
5392010
ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression
H Parkinson, M Kapushesky, N Kolesnikov, G Rustici, M Shojatalab, ...
Nucleic acids research 37 (suppl_1), D868-D872, 2009
5092009
ArrayExpress update—trends in database growth and links to data analysis tools
G Rustici, N Kolesnikov, M Brandizi, T Burdett, M Dylag, I Emam, A Farne, ...
Nucleic acids research 41 (D1), D987-D990, 2012
4312012
Open Targets: a platform for therapeutic target identification and validation
G Koscielny, P An, D Carvalho-Silva, JA Cham, L Fumis, R Gasparyan, ...
Nucleic acids research 45 (D1), D985-D994, 2017
4242017
Expression Atlas update—a database of gene and transcript expression from microarray-and sequencing-based functional genomics experiments
R Petryszak, T Burdett, B Fiorelli, NA Fonseca, M Gonzalez-Porta, ...
Nucleic acids research 42 (D1), D926-D932, 2014
3792014
ArrayExpress update—an archive of microarray and high-throughput sequencing-based functional genomics experiments
H Parkinson, U Sarkans, N Kolesnikov, N Abeygunawardena, T Burdett, ...
Nucleic acids research 39 (suppl_1), D1002-D1004, 2010
3792010
The ontology for biomedical investigations
A Bandrowski, R Brinkman, M Brochhausen, MH Brush, B Bug, ...
PloS one 11 (4), e0154556, 2016
3612016
Modeling biomedical experimental processes with OBI
RR Brinkman, M Courtot, D Derom, JM Fostel, Y He, P Lord, J Malone, ...
Journal of biomedical semantics 1, 1-11, 2010
3262010
The EBI RDF platform: linked open data for the life sciences
S Jupp, J Malone, J Bolleman, M Brandizi, M Davies, L Garcia, A Gaulton, ...
Bioinformatics 30 (9), 1338-1339, 2014
2922014
Gene expression atlas at the European bioinformatics institute
M Kapushesky, I Emam, E Holloway, P Kurnosov, A Zorin, J Malone, ...
Nucleic acids research 38 (suppl_1), D690-D698, 2010
2882010
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats
J Ison, M Kalaš, I Jonassen, D Bolser, M Uludag, H McWilliam, J Malone, ...
Bioinformatics 29 (10), 1325-1332, 2013
2872013
Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments
M Kapushesky, T Adamusiak, T Burdett, A Culhane, A Farne, A Filippov, ...
Nucleic acids research 40 (D1), D1077-D1081, 2012
1852012
MIREOT: The minimum information to reference an external ontology term
M Courtot, F Gibson, AL Lister, J Malone, D Schober, RR Brinkman, ...
Applied Ontology 6 (1), 23-33, 2011
1532011
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ...
PLoS biology 15 (6), e2001414, 2017
1432017
CLO: the cell line ontology
S Sarntivijai, Y Lin, Z Xiang, TF Meehan, AD Diehl, UD Vempati, ...
Journal of biomedical semantics 5, 1-10, 2014
1202014
The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation
J Malone, A Brown, AL Lister, J Ison, D Hull, H Parkinson, R Stevens
Journal of biomedical semantics 5, 1-13, 2014
1042014
Data mining using rule extraction from Kohonen self-organising maps
J Malone, K McGarry, S Wermter, C Bowerman
Neural Computing & Applications 15 (1), 9-17, 2006
1022006
MIRO: guidelines for minimum information for the reporting of an ontology
N Matentzoglu, J Malone, C Mungall, R Stevens
Journal of biomedical semantics 9, 1-13, 2018
792018
MIREOT: the minimum information to reference an external ontology term
M Courtot, F Gibson, A Lister, J Malone, D Schober, RR Brinkman, ...
Aug-2009, 2009
762009
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Artigos 1–20