Jia Meng
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Tet1 is critical for neuronal activity-regulated gene expression and memory extinction
A Rudenko, MM Dawlaty, J Seo, AW Cheng, J Meng, T Le, KF Faull, ...
Neuron 79 (6), 1109-1122, 2013
Epigenetic priming of memory updating during reconsolidation to attenuate remote fear memories
J Gršff, NF Joseph, ME Horn, A Samiei, J Meng, J Seo, D Rei, AW Bero, ...
Cell 156 (1), 261-276, 2014
A protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package
J Meng, Z Lu, H Liu, L Zhang, S Zhang, Y Chen, MK Rao, Y Huang
Methods 69 (3), 274-281, 2014
m6A-Atlas: a comprehensive knowledgebase for unraveling the N6-methyladenosine (m6A) epitranscriptome
Y Tang, K Chen, B Song, J Ma, X Wu, Q Xu, Z Wei, J Su, G Liu, R Rong, ...
Nucleic acids research 49 (D1), D134-D143, 2021
WHISTLE: a high-accuracy map of the human N6-methyladenosine (m6A) epitranscriptome predicted using a machine learning approach
K Chen, Z Wei, Q Zhang, X Wu, R Rong, Z Lu, J Su, JP de Magalh„es, ...
Nucleic Acids Research, 2019
Exome-based analysis for RNA epigenome sequencing data
J Meng, X Cui, MK Rao, Y Chen, Y Huang
Bioinformatics 29 (12), 1565-1567, 2013
Viral and cellular N6-methyladenosine and N6,2′-O-dimethyladenosine epitranscriptomes in the KSHV life cycle
B Tan, H Liu, S Zhang, SR da Silva, L Zhang, J Meng, X Cui, H Yuan, ...
Nature Microbiology, 2017
lncRScan-SVM: A Tool for Predicting Long Non-Coding RNAs Using Support Vector Machine
L Sun, H Liu, L Zhang, J Meng
PLoS ONE 10 (10), 2015
Stepwise feature fusion: Local guides global
J Wang, Q Huang, F Tang, J Meng, J Su, S Song
International Conference on Medical Image Computing and Computer-Assisted†…, 2022
MeT-DB V2.0: elucidating context-specific functions of N6-methyl-adenosine methyltranscriptome
H Liu, H Wang, Z Wei, S Zhang, G Hua, SW Zhang, L Zhang, SJ Gao, ...
Nucleic Acids Research, 2017
Direct and efficient cellular transformation of primary rat mesenchymal precursor cells by KSHV
T Jones, F Ye, R Bedolla, Y Huang, J Meng, L Qian, H Pan, F Zhou, ...
The Journal of clinical investigation 122 (3), 1076-1081, 2012
Guitar: An R/Bioconductor Package for Gene Annotation Guided Transcriptomic Analysis of RNA-Related Genomic Features
JM Xiaodong Cui, Zhen Wei, Lin Zhang, Hui Liu, Lei Sun, Shao-Wu Zhang, Yufei ...
BioMed Research International 2016, 2016
Histone deacetylase 3 associates with MeCP2 to regulate FOXO and social behavior
A Nott, J Cheng, F Gao, YT Lin, E Gjoneska, T Ko, P Minhas, AV Zamudio, ...
Nature Neuroscience, 2016
Early remodeling of the neocortex upon episodic memory encoding
AW Bero, J Meng, S Cho, AH Shen, RG Canter, M Ericsson, LH Tsai
Proceedings of the National Academy of Sciences 111 (32), 11852-11857, 2014
m7GHub: deciphering the location, regulation and pathogenesis of internal mRNA N7-methylguanosine (m7G) sites in human
B Song, Y Tang, K Chen, Z Wei, R Rong, Z Lu, J Su, JP de Magalhaes, ...
Bioinformatics 36 (11), 3528-3536, 2020
A novel algorithm for calling mRNA m 6 A peaks by modeling biological variances in MeRIP-seq data
X Cui, J Meng, S Zhang, Y Chen, Y Huang
Bioinformatics 32 (12), i378-i385, 2016
MeTDiff: a Novel Differential RNA Methylation Analysis for MeRIP-Seq Data
X Cui, L Zhang, J Meng, M Rao, Y Chen, Y Huang
IEEE/ACM Transactions on Computational Biology and Bioinformatics 99 (99), 1, 2018
RNA methylation and diseases: experimental results, databases, Web servers and computational models
X Chen, YZ Sun, H Liu, L Zhang, JQ Li, J Meng
Briefings in Bioinformatics, 2017
RMDisease: a database of genetic variants that affect RNA modifications, with implications for epitranscriptome pathogenesis
K Chen, B Song, Y Tang, Z Wei, Q Xu, J Su, JP de Magalhaes, DJ Rigden, ...
Nucleic acids research 49 (D1), D1396-D1404, 2021
Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely occurring RNA modifications
Z Song, D Huang, B Song, K Chen, Y Song, G Liu, J Su, JP Magalh„es, ...
Nature communications 12 (1), 4011, 2021
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