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Paulo Costa Carvalho
Paulo Costa Carvalho
Carlos Chagas Institute, Fiocruz - Paraná, Brazil
E-mail confirmado em pcarvalho.com - Página inicial
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PYR/PYL/RCAR family members are major in‐vivo ABI1 protein phosphatase 2C‐interacting proteins in Arabidopsis
N Nishimura, A Sarkeshik, K Nito, SY Park, A Wang, PC Carvalho, S Lee, ...
The Plant Journal 61 (2), 290-299, 2010
5422010
Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0
PC Carvalho, DB Lima, FV Leprevost, MDM Santos, JSG Fischer, ...
Nature Protocols 11 (1), 102-117, 2016
2542016
PatternLab for proteomics: a tool for differential shotgun proteomics
PC Carvalho, JSG Fischer, EI Chen, JR Yates, VC Barbosa
BMC bioinformatics 9 (1), 1-14, 2008
1502008
Search engine processor: filtering and organizing peptide spectrum matches
PC Carvalho, JSG Fischer, T Xu, D Cociorva, TS Balbuena, RH Valente, ...
Proteomics 12 (7), 944-949, 2012
1322012
XDIA: improving on the label-free data-independent analysis
PC Carvalho, X Han, T Xu, D Cociorva, M da Gloria Carvalho, ...
Bioinformatics 26 (6), 847-848, 2010
1222010
Identifying differences in protein expression levels by spectral counting and feature selection
PC Carvalho, J Hewel, VC Barbosa, JR Yates III
Genetics and molecular research: GMR 7 (2), 342, 2008
1112008
Improvements in proteomic metrics of low abundance proteins through proteome equalization using ProteoMiner prior to MudPIT
BR Fonslow, PC Carvalho, K Academia, S Freeby, T Xu, A Nakorchevsky, ...
Journal of proteome research 10 (8), 3690-3700, 2011
1072011
SIM-XL: A powerful and user-friendly tool for peptide cross-linking analysis
DB Lima, TB de Lima, TS Balbuena, AGC Neves-Ferreira, VC Barbosa, ...
Journal of proteomics 129, 51-55, 2015
1032015
Platelet proteome reveals novel pathways of platelet activation and platelet-mediated immunoregulation in dengue
MRO Trugilho, ED Hottz, GVF Brunoro, A Teixeira-Ferreira, PC Carvalho, ...
PLoS pathogens 13 (5), e1006385, 2017
982017
YADA: a tool for taking the most out of high-resolution spectra
PC Carvalho, T Xu, X Han, D Cociorva, VC Barbosa, JR Yates III
Bioinformatics 25 (20), 2734-2736, 2009
922009
Improving the TFold test for differential shotgun proteomics
PC Carvalho, JR Yates III, VC Barbosa
Bioinformatics 28 (12), 1652-1654, 2012
832012
PatternLab: from mass spectra to label‐free differential shotgun proteomics
PC Carvalho, JSG Fischer, T Xu, JR Yates III, VC Barbosa
Current protocols in bioinformatics 40 (1), 13.19. 1-13.19. 18, 2012
782012
Identifying components of protein complexes in C. elegans using co-immunoprecipitation and mass spectrometry
JJ Moresco, PC Carvalho, JR Yates III
Journal of proteomics 73 (11), 2198-2204, 2010
752010
On best practices in the development of bioinformatics software
FV Leprevost, VC Barbosa, EL Francisco, Y Perez-Riverol, PC Carvalho
Frontiers in genetics 5, 199, 2014
742014
On best practices in the development of bioinformatics software
FV Leprevost, VC Barbosa, EL Francisco, Y Perez-Riverol, PC Carvalho
Frontiers in genetics 5, 199, 2014
742014
An in-depth snake venom proteopeptidome characterization: Benchmarking Bothrops jararaca
CA Nicolau, PC Carvalho, ILM Junqueira-de-Azevedo, A Teixeira-Ferreira, ...
Journal of Proteomics 151, 214-231, 2017
632017
Single-step inline hydroxyapatite enrichment facilitates identification and quantitation of phosphopeptides from mass-limited proteomes with MudPIT
BR Fonslow, SM Niessen, M Singh, CCL Wong, T Xu, PC Carvalho, ...
Journal of proteome research 11 (5), 2697-2709, 2012
632012
Reevaluating the Trypanosoma cruzi proteomic map: The shotgun description of bloodstream trypomastigotes
GVF Brunoro, MA Caminha, AT da Silva Ferreira, F da Veiga Leprevost, ...
Journal of Proteomics 115, 58-65, 2015
562015
Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins
DB Lima, JT Melchior, J Morris, VC Barbosa, J Chamot-Rooke, ...
Nature protocols 13 (3), 431-458, 2018
552018
PepExplorer: a similarity-driven tool for analyzing de novo sequencing results
FV Leprevost, RH Valente, DB Lima, J Perales, R Melani, JR Yates, ...
Molecular & Cellular Proteomics 13 (9), 2480-2489, 2014
442014
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