Felipe da Veiga Leprevost
Felipe da Veiga Leprevost
Research Investigator, University of Michigan Medical School
Verified email at - Homepage
Cited by
Cited by
MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics
AT Kong, FV Leprevost, DM Avtonomov, D Mellacheruvu, AI Nesvizhskii
Nature methods 14 (5), 513-520, 2017
Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 180 (1), 207, 2020
Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0
PC Carvalho, DB Lima, FV Leprevost, MDM Santos, JSG Fischer, ...
Nature protocols 11 (1), 102-117, 2016
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma
MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ...
Cell 182 (1), 200-225. e35, 2020
BioContainers: an open-source and community-driven framework for software standardization
F da Veiga Leprevost, BA Grüning, S Alves Aflitos, HL Röst, J Uszkoreit, ...
Bioinformatics 33 (16), 2580-2582, 2017
Discovering and linking public omics data sets using the Omics Discovery Index
Y Perez-Riverol, M Bai, F da Veiga Leprevost, S Squizzato, YM Park, ...
Nature biotechnology 35 (5), 406-409, 2017
Ten simple rules for taking advantage of Git and GitHub
Y Perez-Riverol, L Gatto, R Wang, T Sachsenberg, J Uszkoreit, ...
PLoS computational biology 12 (7), e1004947, 2016
Integrated proteogenomic characterization across major histological types of pediatric brain cancer
F Petralia, N Tignor, B Reva, M Koptyra, S Chowdhury, D Rykunov, A Krek, ...
Cell 183 (7), 1962-1985. e31, 2020
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma
C Huang, L Chen, SR Savage, RV Eguez, Y Dou, Y Li, ...
Cancer Cell 39 (3), 361-379. e16, 2021
On best practices in the development of bioinformatics software
FV Leprevost, VC Barbosa, EL Francisco, Y Perez-Riverol, PC Carvalho
Frontiers in genetics 5, 199, 2014
Philosopher: a versatile toolkit for shotgun proteomics data analysis
F da Veiga Leprevost, SE Haynes, DM Avtonomov, HY Chang, ...
Nature methods 17 (9), 869-870, 2020
Reevaluating the Trypanosoma cruzi proteomic map: The shotgun description of bloodstream trypomastigotes
GVF Brunoro, MA Caminha, AT da Silva Ferreira, F da Veiga Leprevost, ...
Journal of Proteomics 115, 58-65, 2015
PepExplorer: a similarity-driven tool for analyzing de novo sequencing results
FV Leprevost, RH Valente, DB Lima, J Perales, R Melani, JR Yates, ...
Molecular & Cellular Proteomics 13 (9), 2480-2489, 2014
Recommendations for the packaging and containerizing of bioinformatics software
G Bjorn, S Olivier, P Moreno, M Hervé, D Sřndergaard, R Hannes, S Timo, ...
F1000Research 7, 2019
Bioconda: Sustainable and comprehensive software distribution for the life sciences
R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ...
Nature Methods 15 (7), 475-476, 2018
The Ewing sarcoma secretome and its response to activation of Wnt/beta-catenin signaling
AG Hawkins, V Basrur, F da Veiga Leprevost, E Pedersen, C Sperring, ...
Molecular & Cellular Proteomics 17 (5), 901-912, 2018
Proteogenomic characterization of pancreatic ductal adenocarcinoma
L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage, K Krug, DJ Clark, ...
Cell 184 (19), 5031-5052. e26, 2021
PTM-Shepherd: analysis and summarization of post-translational and chemical modifications from open search results
DJ Geiszler, AT Kong, DM Avtonomov, F Yu, F da Veiga Leprevost, ...
Molecular & Cellular Proteomics 20, 2021
Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors
SI Djomehri, ME Gonzalez, F da Veiga Leprevost, SR Tekula, HY Chang, ...
Nature communications 11 (1), 1-15, 2020
Venomous extract protein profile of Brazilian tarantula Grammostola iheringi: searching for potential biotechnological applications
MH Borges, SG Figueiredo, FV Leprevost, ME De Lima, MN Cordeiro, ...
Journal of proteomics 136, 35-47, 2016
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