| Lytic to temperate switching of viral communities B Knowles, CB Silveira, BA Bailey, K Barott, VA Cantu, ... Nature 531 (7595), 466-470, 2016 | 355 | 2016 |
| Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT FA von Meijenfeldt, K Arkhipova, DD Cambuy, FH Coutinho, BE Dutilh Genome biology 20 (1), 1-14, 2019 | 146 | 2019 |
| Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans FH Coutinho, CB Silveira, GB Gregoracci, CC Thompson, RA Edwards, ... Nature communications 8 (1), 1-12, 2017 | 142* | 2017 |
| Environmental and sanitary conditions of Guanabara Bay, Rio de Janeiro GO Fistarol, FH Coutinho, APB Moreira, T Venas, A Cánovas, ... Frontiers in microbiology 6, 1232, 2015 | 121 | 2015 |
| Ecogenomics and taxonomy of Cyanobacteria phylum JM Walter, FH Coutinho, BE Dutilh, J Swings, FL Thompson, ... Frontiers in Microbiology 8, 2132, 2017 | 81 | 2017 |
| Genomes of novel microbial lineages assembled from the sub-ice waters of Lake Baikal PJ Cabello-Yeves, TI Zemskaya, R Rosselli, FH Coutinho, AS Zakharenko, ... Applied and environmental microbiology 84 (1), e02132-17, 2018 | 77 | 2018 |
| Antibiotic resistance is widespread in urban aquatic environments of Rio de Janeiro, Brazil FH Coutinho, CB Silveira, LH Pinto, GRB Salloto, AM Cardoso, ... Microbial ecology 68 (3), 441-452, 2014 | 54 | 2014 |
| Thousands of novel endolysins discovered in uncultured phage genomes I Fernández-Ruiz, FH Coutinho, F Rodriguez-Valera Frontiers in microbiology 9, 1033, 2018 | 48 | 2018 |
| Metagenomics sheds light on the ecology of marine microbes and their viruses FH Coutinho, GB Gregoracci, JM Walter, CC Thompson, FL Thompson Trends in microbiology 26 (11), 955-965, 2018 | 46 | 2018 |
| Comparative genomics of Synechococcus and proposal of the new genus Parasynechococcus F Coutinho, DA Tschoeke, F Thompson, C Thompson PeerJ 4, e1522, 2016 | 45 | 2016 |
| Niche distribution and influence of environmental parameters in marine microbial communities: a systematic review FH Coutinho, PM Meirelles, APB Moreira, RP Paranhos, BE Dutilh, ... PeerJ 3, e1008, 2015 | 35 | 2015 |
| Diversity and antibiotic resistance profiles of P seudomonads from a hospital wastewater treatment plant DO Santoro, AM Cardoso, FH Coutinho, LH Pinto, RP Vieira, RM Albano, ... Journal of applied microbiology 119 (6), 1527-1540, 2015 | 33 | 2015 |
| Insights of phage-host interaction in hypersaline ecosystem through metagenomics analyses AM Motlagh, AS Bhattacharjee, FH Coutinho, BE Dutilh, SR Casjens, ... Frontiers in microbiology 8, 352, 2017 | 23 | 2017 |
| Nasopharyngeal microbial communities of patients infected with SARS-CoV-2 that developed COVID-19 MP Ventero, RRC Cuadrat, I Vidal, BGN Andrade, C Molina-Pardines, ... Frontiers in Microbiology, 560, 2021 | 22 | 2021 |
| Contig annotation tool CAT robustly classifies assembled metagenomic contigs and long sequences DD Cambuy, FH Coutinho, BE Dutilh BioRxiv, 072868, 2016 | 22 | 2016 |
| Charting the diversity of uncultured viruses of Archaea and Bacteria FH Coutinho, RA Edwards, F Rodríguez-Valera BMC biology 17 (1), 1-16, 2019 | 21 | 2019 |
| Ecological and genomic features of two widespread freshwater picocyanobacteria PJ Cabello‐Yeves, A Picazo, A Camacho, C Callieri, R Rosselli, ... Environmental microbiology 20 (10), 3757-3771, 2018 | 21 | 2018 |
| Bacterial Community Associated with the Reef Coral Mussismilia braziliensis's Momentum Boundary Layer over a Diel Cycle CB Silveira, GB Gregoracci, FH Coutinho, GGZ Silva, JM Haggerty, ... Frontiers in microbiology 8, 784, 2017 | 21 | 2017 |
| Pollution impacts on bacterioplankton diversity in a tropical urban coastal lagoon system GRB Salloto, AM Cardoso, FH Coutinho, LH Pinto, RP Vieira, C Chaia, ... PloS one 7 (11), e51175, 2012 | 21 | 2012 |
| Antibiotic resistance in aquatic environments of Rio de Janeiro, Brazil FH Coutinho, LH Pinto, RP Vieira, OB Martins, GRB Salloto, ... Perspectives in water pollution 10, 54638, 2013 | 20 | 2013 |
Fabiano ThompsonFederal University of Rio de Janeiro (UFRJ)Verified email at biologia.ufrj.br
