| Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes GD Wu, J Chen, C Hoffmann, K Bittinger, YY Chen, SA Keilbaugh, ... Science 334 (6052), 105-108, 2011 | 7344 | 2011 |
| Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis RA Koeth, Z Wang, BS Levison, JA Buffa, BT Sheehy, EB Britt, X Fu, Y Wu, ... Nature medicine 19 (5), 576-585, 2013 | 4774 | 2013 |
| The human gut virome: Inter-individual variation and dynamic response to diet S Minot, R Sinha, J Chen, H Li, SA Keilbaugh, GD Wu, JD Lewis, ... Genome research 21 (10), 1616-1625, 2011 | 1091 | 2011 |
| Associating microbiome composition with environmental covariates using generalized UniFrac distances J Chen, K Bittinger, ES Charlson, C Hoffmann, J Lewis, GD Wu, ... Bioinformatics 28 (16), 2106-2113, 2012 | 1008 | 2012 |
| Multiple sclerosis patients have a distinct gut microbiota compared to healthy controls J Chen, N Chia, KR Kalari, JZ Yao, M Novotna, MMP Soldan, DH Luckey, ... Scientific Reports 6, 28484, 2016 | 962 | 2016 |
| Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents C Hoffmann, S Dollive, S Grunberg, J Chen, H Li, GD Wu, JD Lewis, ... PLOS ONE 8 (6), e66019, 2013 | 926 | 2013 |
| Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota L Albenberg, TV Esipova, CP Judge, K Bittinger, J Chen, A Laughlin, ... Gastroenterology 147 (5), 1055-1063. e8, 2014 | 873 | 2014 |
| An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis J Chen, K Wright, JM Davis, P Jeraldo, EV Marietta, J Murray, H Nelson, ... Genome medicine 8 (1), 43, 2016 | 796 | 2016 |
| Prediction of linear B-cell epitopes using amino acid pair antigenicity scale J Chen, H Liu, J Yang, KC Chou Amino Acids 33 (3), 423-428, 2007 | 665 | 2007 |
| Disordered microbial communities in the upper respiratory tract of cigarette smokers ES Charlson, J Chen, R Custers-Allen, K Bittinger, H Li, R Sinha, J Hwang, ... PloS one 5 (12), e15216, 2010 | 473 | 2010 |
| Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags G Wu, J Lewis, C Hoffmann, YY Chen, R Knight, K Bittinger, J Hwang, ... BMC microbiology 10 (1), 206, 2010 | 469 | 2010 |
| Relationship Between Microbiota of the Colonic Mucosa vs Feces and Symptoms, Colonic Transit, and Methane Production in Female Patients With Chronic Constipation G Parthasarathy, J Chen, X Chen, N Chia, HM O'Connor, PG Wolf, ... Gastroenterology 150 (2), 367-379, 2016 | 409 | 2016 |
| The Microbiome of Aseptically Collected Human Breast Tissue in Benign and Malignant Disease TJ Hieken, J Chen, TL Hoskin, M Walther-Antonio, S Johnson, S Ramaker, ... Scientific Reports 6, 30751, 2016 | 403 | 2016 |
| Potential contribution of the uterine microbiome in the development of endometrial cancer MRS Walther-António, J Chen, F Multinu, A Hokenstad, TJ Distad, ... Genome Medicine 8 (1), 122, 2016 | 358 | 2016 |
| Testing in Microbiome-Profiling Studies with MiRKAT, the Microbiome Regression-Based Kernel Association Test N Zhao, J Chen, IM Carroll, T Ringel-Kulka, MP Epstein, H Zhou, JJ Zhou, ... The American Journal of Human Genetics 96 (5), 797-807, 2015 | 307 | 2015 |
| Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders GB Saffouri, RR Shields-Cutler, J Chen, Y Yang, HR Lekatz, VL Hale, ... Nature Communications 10 (1), 2012, 2019 | 264 | 2019 |
| Variable selection for sparse Dirichlet-multinomial regression with an application to microbiome data analysis J Chen, H Li The Annals of Applied Statistics 7 (1), 418-442, 2013 | 248 | 2013 |
| GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data L Chen, J Reeve, L Zhang, S Huang, X Wang, J Chen PeerJ 6, e4600, 2018 | 214 | 2018 |
| Assessing Bacterial Populations in the Lung by Replicate Analysis of Samples from the Upper and Lower Respiratory Tracts ES Charlson, K Bittinger, J Chen, JM Diamond, H Li, RG Collman, ... PloS one 7 (9), e42786, 2012 | 193 | 2012 |
| Shifts in the fecal microbiota associated with adenomatous polyps VL Hale, J Chen, S Johnson, SC Harrington, TC Yab, TC Smyrk, H Nelson, ... Cancer Epidemiology and Prevention Biomarkers 26 (1), 85-94, 2017 | 192 | 2017 |
Hongzhe Li, PhDUniversity of PennsylvaniaVerified email at upenn.edu
