Snoopy–a unifying Petri net tool M Heiner, M Herajy, F Liu, C Rohr, M Schwarick Application and Theory of Petri Nets: 33rd International Conference, PETRI …, 2012 | 331 | 2012 |
Fuzzy stochastic petri nets for modeling biological systems with uncertain kinetic parameters F Liu, M Heiner, M Yang PloS one 11 (2), e0149674, 2016 | 64 | 2016 |
Colored Petri nets for systems biology F Liu BTU Cottbus-Senftenberg, 2012 | 60 | 2012 |
Colouring space-a coloured framework for spatial modelling in systems biology D Gilbert, M Heiner, F Liu, N Saunders Application and Theory of Petri Nets and Concurrency: 34th International …, 2013 | 52 | 2013 |
Modelling and simulating reaction–diffusion systems using coloured Petri nets F Liu, MA Blätke, M Heiner, M Yang Computers in Biology and Medicine 53, 297-308, 2014 | 51 | 2014 |
Multiscale modeling and analysis of planar cell polarity in the Drosophila wing Q Gao, D Gilbert, M Heiner, F Liu, D Maccagnola, D Tree IEEE/ACM Transactions on Computational Biology and Bioinformatics 10 (2 …, 2012 | 49 | 2012 |
Coloured Petri nets for multilevel, multiscale and multidimensional modelling of biological systems F Liu, M Heiner, D Gilbert Briefings in bioinformatics 20 (3), 877-886, 2019 | 47 | 2019 |
An efficient method for unfolding colored Petri nets F Liu, M Heiner, M Yang Proceedings of the 2012 Winter Simulation Conference (WSC), 1-12, 2012 | 41 | 2012 |
Petri nets for modeling and analyzing biochemical reaction networks F Liu, M Heiner Approaches in Integrative Bioinformatics: Towards the Virtual Cell, 245-272, 2014 | 38 | 2014 |
Manual for colored Petri nets in Snoopy F Liu, M Heiner, C Rohr Brandenburg University of Technology Cottbus, available at: http://www-dssz …, 2012 | 34 | 2012 |
Colored Petri nets to model and simulate biological systems F Liu, M Heiner Recent advances in Petri Nets and concurrency 827, 71-85, 2012 | 33 | 2012 |
Study on simulation credibility metrics F Liu, M Yang, Z Wang Proceedings of the Winter Simulation Conference, 2005., 7 pp., 2005 | 33 | 2005 |
Snoopy’s hybrid simulator: a tool to construct and simulate hybrid biological models M Herajy, F Liu, C Rohr, M Heiner BMC systems biology 11, 1-16, 2017 | 32 | 2017 |
Fuzzy Petri nets for modelling of uncertain biological systems F Liu, M Heiner, D Gilbert Briefings in bioinformatics 21 (1), 198-210, 2020 | 31 | 2020 |
Modeling membrane systems using colored stochastic Petri nets F Liu, M Heiner Natural Computing 12, 617-629, 2013 | 30 | 2013 |
Coloured hybrid Petri nets for systems biology. M Herajy, F Liu, C Rohr BioPPN@ Petri Nets, 60-76, 2014 | 27 | 2014 |
Efficient modelling of yeast cell cycles based on multisite phosphorylation using coloured hybrid Petri nets with marking-dependent arc weights M Herajy, F Liu, M Heiner Nonlinear Analysis: Hybrid Systems 27, 191-212, 2018 | 24 | 2018 |
Multiscale modelling of coupled Ca2+ channels using coloured stochastic Petri nets F Liu, M Heiner IET Systems Biology 7 (4), 106-113, 2013 | 24 | 2013 |
Spatial-temporal modelling and analysis of bacterial colonies with phase variable genes O Pârvu, D Gilbert, M Heiner, F Liu, N Saunders, S Shaw ACM Transactions on Modeling and Computer Simulation (TOMACS) 25 (2), 1-25, 2015 | 23 | 2015 |
Coloured Hybrid Petri Nets: An adaptable modelling approach for multi-scale biological networks M Herajy, F Liu, C Rohr, M Heiner Computational Biology and Chemistry 76, 87-100, 2018 | 22 | 2018 |