| MARVEL, a tool for prediction of bacteriophage sequences in metagenomic bins D Amgarten, LPP Braga, AM Da Silva, JC Setubal Frontiers in genetics 9, 304, 2018 | 163 | 2018 |
| SARS-CoV-2 isolation from the first reported patients in Brazil and establishment of a coordinated task network DB Araujo, RRG Machado, DE Amgarten, FM Malta, GG de Araujo, ... Memórias do Instituto Oswaldo Cruz 115, e200342, 2020 | 120 | 2020 |
| Bacterial diversification in the light of the interactions with phages: the genetic symbionts and their role in ecological speciation LPP Braga, SM Soucy, DE Amgarten, AM Da Silva, JC Setubal Frontiers in Ecology and Evolution 6, 6, 2018 | 47 | 2018 |
| Risk factors for long coronavirus disease 2019 (long COVID) among healthcare personnel, Brazil, 2020–2022 AR Marra, VS Sampaio, MC Ozahata, R Lopes, AF Brito, M Bragatte, ... Infection Control & Hospital Epidemiology 44 (12), 1972-1978, 2023 | 33 | 2023 |
| Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages D Amgarten, LF Martins, KC Lombardi, LP Antunes, APS de Souza, ... BMC genomics 18, 1-18, 2017 | 32 | 2017 |
| Effectiveness of heterologous coronavirus disease 2019 (COVID-19) vaccine booster dosing in Brazilian healthcare workers, 2021 AR Marra, JL Miraglia, DT Malheiros, Y Guozhang, VD Teich, ... Clinical Infectious Diseases 76 (3), e360-e366, 2023 | 28 | 2023 |
| Sabiá virus–like mammarenavirus in patient with fatal hemorrhagic fever, Brazil, 2020 F de Mello Malta, D Amgarten, ACSS Nastri, YL Ho, LVB Casadio, ... Emerging infectious diseases 26 (6), 1332, 2020 | 25 | 2020 |
| vHULK, a new tool for bacteriophage host prediction based on annotated genomic features and deep neural networks D Amgarten, BKV Iha, CM Piroupo, AM Da Silva, JC Setubal bioRxiv, 2020.12. 06.413476, 2020 | 17 | 2020 |
| Mass molecular testing for COVID19 using NGS-based technology and a highly scalable workflow F de Mello Malta, D Amgarten, FC Val, MC Cervato, BMC de Azevedo, ... Scientific reports 11 (1), 7122, 2021 | 16 | 2021 |
| vHULK, a new tool for bacteriophage host prediction based on annotated genomic features and neural networks D Amgarten, BKV Iha, CM Piroupo, AM da Silva, JC Setubal Phage 3 (4), 204-212, 2022 | 14 | 2022 |
| Novel virocell metabolic potential revealed in agricultural soils by virus‐enriched soil metagenome analysis LPP Braga, FH Coutinho, DE Amgarten, W Kot, L Hansen, JC Setubal, ... Environmental microbiology reports 13 (3), 348-354, 2021 | 11 | 2021 |
| First report and genetic characterization of the highly pathogenic avian influenza A (H5N1) virus in Cabot's tern (Thalasseus acuflavidus), Brazil D Reischak, AV Rivetti Jr, JNP Otaka, CS Domingues, T de Lima Freitas, ... Veterinary and Animal Science 22, 100319, 2023 | 10 | 2023 |
| Effectiveness of two COVID-19 vaccines (viral vector and inactivated viral vaccine) against SARS-CoV-2 infection in a cohort of healthcare workers AR Marra, JL Miraglia, DT Malheiros, Y Guozhang, VD Teich, ... Infect Control Hosp Epidemiol 43, 1-20, 2022 | 10 | 2022 |
| Detection of Hepatitis E Virus Genotype 3 in Feces of Capybaras (Hydrochoeris hydrochaeris) in Brazil L Cunha, A Luchs, LS Azevedo, VCM Silva, MF Lemos, AC Costa, ... Viruses 15 (2), 335, 2023 | 8 | 2023 |
| Malta FdM, de Araujo GG, Monteiro CO, Candido ED, Soares CP, de Menezes FG, Pires ACC, et al. SARS-CoV-2 isolation from the first reported patients in Brazil and establishment … DB Araujo, RRG Machado, DE Amgarten Mem. Inst. Oswaldo Cruz 115, e200342, 2020 | 8 | 2020 |
| Incursion of highly pathogenic avian influenza A (H5N1) clade 2.3. 4.4 b virus, Brazil, 2023 AC de Araújo, LMN Silva, AY Cho, M Repenning, D Amgarten, ... Emerging Infectious Diseases 30 (3), 619, 2024 | 6 | 2024 |
| Effectiveness of two coronavirus disease 2019 (COVID-19) vaccines (viral vector and inactivated viral vaccine) against severe acute respiratory coronavirus virus 2 (SARS-CoV-2 … AR Marra, JL Miraglia, DT Malheiros, Y Guozhang, VD Teich, ... Infection Control & Hospital Epidemiology 44 (1), 75-81, 2023 | 6 | 2023 |
| Mortality in sea lions is associated with the introduction of the H5N1 clade 2.3. 4.4 b virus in Brazil October 2023: whole genome sequencing and phylogenetic analysis A de Carvalho Araujo, AY Cho, LMN Silva, TC Corrêa, GC de Souza, ... BMC Veterinary Research 20 (1), 285, 2024 | 4 | 2024 |
| Risk factors for long COVID among healthcare workers, Brazil, 2020–2022 AR Marra, VS Sampaio, MC Ozahata, RLP da Silva, A Brito, M Bragatte, ... medRxiv, 2023.01. 03.22284043, 2023 | 4 | 2023 |
| Updating the Phylodynamics of Yellow Fever Virus 2016–2019 Brazilian Outbreak With New 2018 and 2019 São Paulo Genomes AP Moreira Salles, AC de Seixas Santos Nastri, YL Ho, ... Frontiers in Microbiology 13, 811318, 2022 | 4 | 2022 |
João Renato Rebello PinhoUniversidade de São Paulo & Hospital Israelita Albert EinsteinVerified email at usp.br
