Daniel Valenzuela
Daniel Valenzuela
Postdoctoral researcher, University of Helsinki
Verified email at cs.helsinki.fi - Homepage
Title
Cited by
Cited by
Year
Computational pan-genomics: status, promises and challenges
Computational Pan-Genomics Consortium
Briefings in Bioinformatics, bbw089, 2016
1482016
Improved compressed indexes for full-text document retrieval
D Belazzougui, G Navarro, D Valenzuela
Journal of Discrete Algorithms 18, 3-13, 2013
542013
Practical compressed document retrieval
G Navarro, SJ Puglisi, D Valenzuela
International Symposium on Experimental Algorithms, 193-205, 2011
402011
Space-efficient top-k document retrieval
G Navarro, D Valenzuela
International Symposium on Experimental Algorithms, 307-319, 2012
292012
General document retrieval in compact space
G Navarro, SJ Puglisi, D Valenzuela
Journal of Experimental Algorithmics (JEA) 19, 1-46, 2015
242015
Towards pan-genome read alignment to improve variation calling
D Valenzuela, T Norri, N Välimäki, E Pitkänen, V Mäkinen
BMC genomics 19 (2), 123-130, 2018
152018
Compressed spaced suffix arrays
T Gagie, G Manzini, D Valenzuela
Mathematics in Computer Science 11 (2), 151-157, 2017
122017
CHICO: A compressed hybrid index for repetitive collections
D Valenzuela
International Symposium on Experimental Algorithms, 326-338, 2016
122016
Recombination-aware alignment of diploid individuals
V Mäkinen, D Valenzuela
BMC genomics 15 (S6), S15, 2014
62014
Analyzing Relative Lempel-Ziv Reference Construction
T Gagie, SJ Puglisi, D Valenzuela
International Symposium on String Processing and Information Retrieval, 160-165, 2016
52016
Interval scheduling maximizing minimum coverage
V Mäkinen, V Staneva, AI Tomescu, D Valenzuela, S Wilzbach
Discrete Applied Mathematics, 2017
42017
CHIC: a short read aligner for pan-genomic references
D Valenzuela, V Mäkinen
bioRxiv, 178129, 2017
42017
Lempel–ziv‑like parsing in small space
D Kosolobov, D Valenzuela, G Navarro, SJ Puglisi
Springer, 2020
3*2020
Compressed Suffix Array.
D Belazzougui, V Mäkinen, D Valenzuela
Encyclopedia of Algorithms, 386-390, 2016
32016
Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics
R Rizzi, M Cairo, V Makinen, AI Tomescu, D Valenzuela
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018
2*2018
Diploid Alignments and Haplotyping
V Mäkinen, D Valenzuela
International Symposium on Bioinformatics Research and Applications, 235-246, 2015
22015
Algorithms and Data Structures for Sequence Analysis in the Pan-Genomic Era
D Valenzuela
Ph. D. Dissertation. University of Helsinki, Finland, 2017
12017
Scalable Reference Genome Assembly from Compressed Pan-Genome Index with Spark
AI Maarala, O Arasalo, D Valenzuela, K Heljanko, V Mäkinen
International Conference on Big Data, 68-84, 2020
2020
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