|Analysis of computational footprinting methods for DNase sequencing experiments|
EG Gusmao, M Allhoff, M Zenke, IG Costa
Nature methods 13 (4), 303-309, 2016
|Detection of active transcription factor binding sites with the combination of DNase hypersensitivity and histone modifications|
EG Gusmao, C Dieterich, M Zenke, IG Costa
Bioinformatics 30 (22), 3143-3151, 2014
|HMGB2 loss upon senescence entry disrupts genomic organization and induces CTCF clustering across cell types|
A Zirkel, M Nikolic, K Sofiadis, JP Mallm, CA Brackley, H Gothe, ...
Molecular cell 70 (4), 730-744. e6, 2018
|Replicative senescence is associated with nuclear reorganization and with DNA methylation at specific transcription factor binding sites|
S Hänzelmann, F Beier, EG Gusmao, CM Koch, S Hummel, I Charapitsa, ...
Clinical epigenetics 7 (1), 1-15, 2015
|Spatial chromosome folding and active transcription drive DNA fragility and formation of oncogenic MLL translocations|
HJ Gothe, BAM Bouwman, EG Gusmao, R Piccinno, G Petrosino, ...
Molecular cell 75 (2), 267-283. e12, 2019
|The interaction of MYC with the trithorax protein ASH2L promotes gene transcription by regulating H3K27 modification|
A Ullius, J Lüscher-Firzlaff, IG Costa, G Walsemann, AH Forst, ...
Nucleic acids research 42 (11), 6901-6920, 2014
|Epigenetic program and transcription factor circuitry of dendritic cell development|
Q Lin, H Chauvistré, IG Costa, EG Gusmao, S Mitzka, S Hänzelmann, ...
Nucleic acids research 43 (20), 9680-9693, 2015
|Results of a randomized, prospective clinical trial evaluating metronomic chemotherapy in nonmetastatic patients with high‐grade, operable osteosarcomas of the extremities: A …|
AA Senerchia, CR Macedo, S Ferman, M Scopinaro, W Cacciavillano, ...
Cancer 123 (6), 1003-1010, 2017
|Binding of nuclear factor κB to noncanonical consensus sites reveals its multimodal role during the early inflammatory response|
P Kolovos, T Georgomanolis, A Koeferle, JD Larkin, L Brant, M Nikolicć, ...
Genome research 26 (11), 1478-1489, 2016
|Mtss1 is a critical epigenetically regulated tumor suppressor in CML|
M Schemionek, O Herrmann, MM Reher, N Chatain, C Schubert, IG Costa, ...
Leukemia 30 (4), 823-832, 2016
|Sox5 regulates beta-cell phenotype and is reduced in type 2 diabetes|
AS Axelsson, T Mahdi, HA Nenonen, T Singh, S Hänzelmann, A Wendt, ...
Nature communications 8 (1), 1-16, 2017
|Redundant and specific roles of cohesin STAG subunits in chromatin looping and transcriptional control|
V Casa, MM Gines, EG Gusmao, JA Slotman, A Zirkel, N Josipovic, E Oole, ...
Genome research 30 (4), 515-527, 2020
|iHi-C 2.0: A simple approach for mapping native spatial chromatin organisation from low cell numbers|
A Mizi, EG Gusmao, A Papantonis
Methods 170, 33-37, 2020
|Issues on sampling negative examples for predicting prokaryotic promoters|
EG Gusmäo, MCP de Souto
2014 International Joint Conference on Neural Networks (IJCNN), 494-501, 2014
|Prediction of transcription factor binding sites by integrating dnase digestion and histone modification|
EG Gusmao, C Dieterich, IG Costa
Brazilian Symposium on Bioinformatics, 109-119, 2012
|A case-control study of non-parametric approaches for detecting snp-snp interactions|
FRB de Araújo, EG Gusmao, KS Guimaraes
2011 30th International Conference of the Chilean Computer Science Society …, 2011
|HMGB1 coordinates SASP-related chromatin folding and RNA homeostasis on the path to senescence|
K Sofiadis, M Nikolic, Y Kargapolova, N Josipovic, A Zirkel, A Papadakis, ...
bioRxiv, 540146, 2020
|Overarching control of autophagy and DNA damage response by CHD6 revealed by modeling a rare human pathology|
Y Kargapolova, R Rehimi, H Kayserili, J Brühl, A Zirkel, Y Li, G Yigit, ...
|Genomic instability is an early event driving chromatin reorganization and escape from oncogene-induced senescence|
C Zampetidis, P Galanos, A Angelopoulou, Y Zhu, T Karamitros, ...
|Retrieving high-resolution chromatin interactions and decoding enhancer regulatory potential in silico|
EG Gusmao, A Mizi, L Brant, A Papantonis