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Gabriele Schweikert
Gabriele Schweikert
PI, University of Dundee, UK and Universität Tübingen, Germany
E-mail confirmado em dundee.ac.uk - Página inicial
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Ano
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana
RM Clark, G Schweikert, C Toomajian, S Ossowski, G Zeller, P Shinn, ...
Science 317 (5836), 338, 2007
8422007
Accurate splice site prediction using support vector machines
S Sonnenburg, G Schweikert, P Philips, J Behr, G Rätsch
BMC bioinformatics 8 (Suppl 10), S7, 2007
2442007
An empirical analysis of domain adaptation algorithms
G Schweikert, C Widmer, B Schölkopf, G Rätsch
Advances in Neural Information Processing System, NIPS, Volume, 2008
190*2008
mGene: Accurate SVM-based gene finding with an application to nematode genomes
G Schweikert, A Zien, G Zeller, J Behr, C Dieterich, CS Ong, P Philips, ...
Genome research 19 (11), 2133-2143, 2009
1242009
MeCP2 recognizes cytosine methylated tri-nucleotide and di-nucleotide sequences to tune transcription in the mammalian brain
S Lagger, JC Connelly, G Schweikert, S Webb, J Selfridge, ...
PLoS genetics 13 (5), e1006793, 2017
1192017
Morphological characterization of molecular complexes present in the synaptic cleft
V Lucˇic, T Yang, G Schweikert, F Förster, W Baumeister
Structure 13 (3), 423-434, 2005
1162005
nGASP: the nematode genome annotation assessment project
A Coghlan, TJ Fiedler, SJ McKay, P Flick, TW Harris, D Blasiar, ...
BMC Bioinformatics 9 (1), 549, 2008
792008
Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress
R Van Nues, G Schweikert, E De Leau, A Selega, A Langford, R Franklin, ...
Nature communications 8 (1), 12, 2017
562017
MMDiff: quantitative testing for shape changes in ChIP-Seq data sets
G Schweikert, B Cseke, T Clouaire, A Bird, G Sanguinetti
BMC genomics 14, 1-17, 2013
532013
mRNA cap methyltransferase, RNMT-RAM, promotes RNA Pol II-dependent transcription
D Varshney, O Lombardi, G Schweikert, S Dunn, O Suska, VH Cowling
Cell Reports 23 (5), 1530-1542, 2018
402018
M3D: a kernel-based test for spatially correlated changes in methylation profiles
TR Mayo, G Schweikert, G Sanguinetti
Bioinformatics 31 (6), 809-816, 2015
372015
mGene.web: a web service for accurate computational gene finding
G Schweikert, J Behr, A Zien, G Zeller, CS Ong, S Sonnenburg, G Rätsch
Nucleic acids research 37 (suppl_2), W312-W316, 2009
312009
Acute depletion of the ARID1A subunit of SWI/SNF complexes reveals distinct pathways for activation and repression of transcription
S Blümli, N Wiechens, MY Wu, V Singh, M Gierlinski, G Schweikert, ...
Cell reports 37 (5), 2021
262021
Next generation genome annotation with mGene. ngs
J Behr, R Bohnert, G Zeller, G Schweikert, L Hartmann, G Rätsch
BMC bioinformatics 11, 1-2, 2010
132010
Mimicking tumor cell heterogeneity of colorectal cancer in a patient-derived organoid-fibroblast model
VS Atanasova, C de Jesus Cardona, V Hejret, A Tiefenbacher, T Mair, ...
Cellular and Molecular Gastroenterology and Hepatology 15 (6), 1391-1419, 2023
82023
DGW: an exploratory data analysis tool for clustering and visualisation of epigenomic marks
S Lukauskas, R Visintainer, G Sanguinetti, GB Schweikert
BMC bioinformatics 17, 53-63, 2016
82016
The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles
J Schreiber, C Boix, J wook Lee, H Li, Y Guan, CC Chang, JC Chang, ...
Genome biology 24 (1), 79, 2023
72023
Requirement of DNMT1 to orchestrate epigenomic reprogramming for NPM-ALK–driven lymphomagenesis
E Redl, R Sheibani-Tezerji, C de Jesus Cardona, P Hamminger, ...
Life Science Alliance 4 (2), 2021
62021
A historical perspective of biomedical explainable AI research
L Malinverno, V Barros, F Ghisoni, G Visonà, R Kern, PJ Nickel, ...
Patterns 4 (9), 2023
5*2023
Getting personal with epigenetics: towards individual-specific epigenomic imputation with machine learning
A Hawkins-Hooker, G Visonà, T Narendra, M Rojas-Carulla, B Schölkopf, ...
Nature Communications 14 (1), 4750, 2023
3*2023
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