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james hadfield
james hadfield
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Year
Nextstrain: real-time tracking of pathogen evolution
J Hadfield, C Megill, SM Bell, J Huddleston, B Potter, C Callender, ...
Bioinformatics 34 (23), 4121-4123, 2018
28362018
Phandango: an interactive viewer for bacterial population genomics
J Hadfield, NJ Croucher, RJ Goater, K Abudahab, DM Aanensen, ...
Bioinformatics, btx610, 2017
5092017
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events
VK Wong, S Baker, DJ Pickard, J Parkhill, AJ Page, NA Feasey, ...
Nature genetics 47 (6), 632-639, 2015
4652015
Cryptic transmission of SARS-CoV-2 in Washington state
T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ...
Science 370 (6516), 571-575, 2020
2932020
Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings
NA Feasey, J Hadfield, KH Keddy, TJ Dallman, J Jacobs, X Deng, ...
Nature genetics 48 (10), 1211-1217, 2016
1872016
An emergent clade of SARS-CoV-2 linked to returned travellers from Iran
JS Eden, R Rockett, I Carter, H Rahman, J De Ligt, J Hadfield, M Storey, ...
Virus Evolution 6 (1), veaa027, 2020
1352020
Twenty years of West Nile virus spread and evolution in the Americas visualized by Nextstrain
J Hadfield, AF Brito, DM Swetnam, CBF Vogels, RE Tokarz, KG Andersen, ...
PLoS pathogens 15 (10), e1008042, 2019
1192019
Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion
J Hadfield, SR Harris, HMB Seth-Smith, S Parmar, P Andersson, ...
Genome research 27 (7), 1220-1229, 2017
1092017
Emergence of host-adapted Salmonella Enteritidis through rapid evolution in an immunocompromised host
EJ Klemm, E Gkrania-Klotsas, J Hadfield, JL Forbester, SR Harris, C Hale, ...
Nature microbiology 1 (3), 1-6, 2016
902016
Molecular characterisation of a novel cassava associated circular ssDNA virus
A Dayaram, A Opong, A Jäschke, J Hadfield, M Baschiera, RCJ Dobson, ...
Virus research 166 (1-2), 130-135, 2012
642012
Molecular characterisation of dicot-infecting mastreviruses from Australia
J Hadfield, JE Thomas, MW Schwinghamer, S Kraberger, D Stainton, ...
Virus research 166 (1-2), 13-22, 2012
502012
Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages
P Andersson, SR Harris, HMBS Smith, J Hadfield, C O’Neill, LT Cutcliffe, ...
Nature communications 7 (1), 10688, 2016
452016
The Seattle Flu Study: a multiarm community-based prospective study protocol for assessing influenza prevalence, transmission and genomic epidemiology
HY Chu, M Boeckh, JA Englund, M Famulare, B Lutz, DA Nickerson, ...
BMJ open 10 (10), e037295, 2020
352020
Evolution and rapid spread of a reassortant A (H3N2) virus that predominated the 2017–2018 influenza season
BI Potter, R Kondor, J Hadfield, J Huddleston, J Barnes, T Rowe, L Guo, ...
Virus evolution 5 (2), vez046, 2019
242019
Australian monocot-infecting mastrevirus diversity rivals that in Africa
S Kraberger, JE Thomas, ADW Geering, A Dayaram, D Stainton, ...
Virus research 169 (1), 127-136, 2012
232012
The role of Kenya in the trans-African spread of maize streak virus strain A
D Pande, E Madzokere, P Hartnady, S Kraberger, J Hadfield, K Rosario, ...
Virus research 232, 69-76, 2017
142017
Modeling secondary messenger pathways in neurovascular coupling
J Hadfield, MJ Plank, T David
Bulletin of mathematical biology 75, 428-443, 2013
142013
The Nature and Extent of Plasmid Variation in Chlamydia trachomatis
CA Jones, J Hadfield, NR Thomson, DW Cleary, P Marsh, IN Clarke, ...
Microorganisms 8 (3), 373, 2020
132020
Complete genome sequence of a dahlia common mosaic virus isolate from New Zealand
J Hadfield, D Linderme, DN Shepherd, M Bezuidenhout, P Lefeuvre, ...
Archives of virology 156, 2297-2301, 2011
112011
Bromus catharticus striate mosaic virus: a new mastrevirus infecting Bromus catharticus from Australia
J Hadfield, DP Martin, D Stainton, S Kraberger, BE Owor, DN Shepherd, ...
Archives of virology 156, 335-341, 2011
92011
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Articles 1–20