The IDP-Specific Force Field ff14IDPSFF Improves the Conformer Sampling of Intrinsically Disordered Proteins D Song, R Luo, HF Chen Journal of chemical information and modeling 57 (5), 1166-1178, 2017 | 165 | 2017 |
ff14IDPs force field improving the conformation sampling of intrinsically disordered proteins D Song, W Wang, W Ye, D Ji, R Luo, HF Chen Chemical biology & drug design 89 (1), 5-15, 2017 | 74 | 2017 |
Intrinsically disordered protein‐specific force field CHARMM 36 IDPSFF H Liu, D Song, H Lu, R Luo, HF Chen Chemical biology & drug design 92 (4), 1722-1735, 2018 | 63 | 2018 |
Somatic MAP3K3 mutation defines a subclass of cerebral cavernous malformation J Weng, Y Yang, D Song, R Huo, H Li, Y Chen, Y Nam, Q Zhou, Y Jiao, ... The American Journal of Human Genetics 108 (5), 942-950, 2021 | 60 | 2021 |
Environment-specific force field for intrinsically disordered and ordered proteins D Song, H Liu, R Luo, HF Chen Journal of chemical information and modeling 60 (4), 2257-2267, 2020 | 50 | 2020 |
The landscape of protein tyrosine phosphatase (Shp2) and cancer AU Rehman, MU Rahman, MT Khan, S Saud, H Liu, D Song, P Sultana, ... Current Pharmaceutical Design 24 (32), 3767-3777, 2018 | 43 | 2018 |
Extensive tests and evaluation of the CHARMM36IDPSFF force field for intrinsically disordered proteins and folded proteins H Liu, D Song, Y Zhang, S Yang, R Luo, HF Chen Physical Chemistry Chemical Physics 21 (39), 21918-21931, 2019 | 41 | 2019 |
Driving axon regeneration by orchestrating neuronal and non-neuronal innate immune responses via the IFNγ-cGAS-STING axis X Wang, C Yang, X Wang, J Miao, W Chen, Y Zhou, Y Xu, Y An, A Cheng, ... Neuron 111 (2), 236-255. e7, 2023 | 24 | 2023 |
De novo germline and somatic variants convergently promote endothelial-to-mesenchymal transition in simplex brain arteriovenous malformation H Li, Y Nam, R Huo, W Fu, B Jiang, Q Zhou, D Song, Y Yang, Y Jiao, ... Circulation research 129 (9), 825-839, 2021 | 20 | 2021 |
Characterization of a recombinant thermotolerant argonaute protein as an endonuclease by broad guide utilization Y Chong, Q Liu, F Huang, D Song, Y Feng Bioresources and Bioprocessing 6, 1-10, 2019 | 10 | 2019 |
The trimeric Hef-associated nuclease HAN is a 3′→ 5′ exonuclease and is probably involved in DNA repair L Feng, CC Chang, D Song, C Jiang, Y Song, CF Wang, W Deng, YJ Zou, ... Nucleic acids research 46 (17), 9027-9043, 2018 | 9 | 2018 |
Selectivity mechanism of ATP‐competitive inhibitors for PKB and PKA K Wu, J Pang, D Song, Y Zhu, C Wu, T Shao, H Chen Chemical Biology & Drug Design 86 (1), 9-18, 2015 | 7 | 2015 |
Noncoding mutations cause super-enhancer retargeting resulting in protein synthesis dysregulation during B cell lymphoma progression RJ Leeman-Neill, D Song, J Bizarro, L Wacheul, G Rothschild, S Singh, ... Nature genetics 55 (12), 2160-2174, 2023 | 6 | 2023 |
CELLO: a longitudinal data analysis toolbox untangling cancer evolution B Jiang, D Song, Q Mu, J Wang Quantitative Biology 8 (3), 256-266, 2020 | 5 | 2020 |
Identifying predictors of glioma evolution from longitudinal sequencing Q Mu, R Chai, B Pang, Y Yang, H Liu, Z Zhao, Z Bao, D Song, Z Zhu, ... Science translational medicine 15 (716), eadh4181, 2023 | 2 | 2023 |
Synthesis and degradation of the cyclic dinucleotide messenger c‐di‐AMP in the hyperthermophilic archaeon Pyrococcus yayanosii Z Jin, D Song, WW Wang, L Feng, ZX Li, HF Chen, X Xiao, XP Liu Protein Science 32 (12), e4829, 2023 | | 2023 |
Somatic GJA4 mutation in intracranial extra-axial cavernous hemangiomas R Huo, Y Yang, H Xu, S Zhao, D Song, J Weng, R Ma, Y Sun, J Wang, ... Stroke and Vascular Neurology 8 (6), 2023 | | 2023 |
Mechanism Underlying the Bypass of Apurinic/Pyrimidinic Site Analogs by Sulfolobus acidocaldarius DNA Polymerase IV QY Huang, D Song, WW Wang, L Peng, HF Chen, X Xiao, XP Liu International Journal of Molecular Sciences 23 (5), 2729, 2022 | | 2022 |