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Silvi Rouskin
Silvi Rouskin
Harvard Medical School
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The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments
AMMGJSW Nicholas T Ingolia, Gloria A Brar, Silvia Rouskin
Nature Protocols 7, 1534–1550, 2012
12672012
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
S Rouskin, M Zubradt, S Washietl, M Kellis, JS Weissman
Nature 505 (7485), 701-705, 2014
8642014
A ribosome-bound quality control complex triggers degradation of nascent peptides and signals translation stress
O Brandman, J Stewart-Ornstein, D Wong, A Larson, CC Williams, GW Li, ...
Cell 151 (5), 1042-1054, 2012
6432012
DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo
M Zubradt, P Gupta, S Persad, AM Lambowitz, JS Weissman, S Rouskin
Nature methods 14 (1), 75-82, 2017
4272017
Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity
A Kistler, PC Avila, S Rouskin, D Wang, T Ward, S Yagi, D Schnurr, ...
Journal of Infectious Diseases 196 (6), 817-825, 2007
3332007
Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation
C Pop, S Rouskin, NT Ingolia, L Han, EM Phizicky, JS Weissman, D Koller
Molecular systems biology 10 (12), 770, 2014
2882014
A stress response that monitors and regulates mRNA structure is central to cold shock adaptation
Y Zhang, DH Burkhardt, S Rouskin, GW Li, JS Weissman, CA Gross
Molecular cell 70 (2), 274-286. e7, 2018
1692018
Operon mRNAs are organized into ORF-centric structures that predict translation efficiency
DH Burkhardt, S Rouskin, Y Zhang, GW Li, JS Weissman, CA Gross
Elife 6, e22037, 2017
1562017
Determination of RNA structural diversity and its role in HIV-1 RNA splicing
PJ Tomezsko, VDA Corbin, P Gupta, H Swaminathan, M Glasgow, ...
Nature 582 (7812), 438-442, 2020
1552020
Microarray detection of human parainfluenzavirus 4 infection associated with respiratory failure in an immunocompetent adult
CY Chiu, S Rouskin, A Koshy, A Urisman, K Fischer, S Yagi, D Schnurr, ...
Clinical Infectious Diseases 43 (8), e71-e76, 2006
1172006
Genome-wide diversity and selective pressure in the human rhinovirus
AL Kistler, DR Webster, S Rouskin, V Magrini, JJ Credle, DP Schnurr, ...
Virology journal 4, 1-19, 2007
1092007
Utility of DNA microarrays for detection of viruses in acute respiratory tract infections in children
CY Chiu, A Urisman, TL Greenhow, S Rouskin, S Yagi, D Schnurr, ...
The Journal of pediatrics 153 (1), 76-83. e1, 2008
932008
Diagnosis of a critical respiratory illness caused by human metapneumovirus by use of a pan-virus microarray
CY Chiu, AA Alizadeh, S Rouskin, JD Merker, E Yeh, S Yagi, D Schnurr, ...
Journal of clinical microbiology 45 (7), 2340-2343, 2007
882007
Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells
TCT Lan, MF Allan, LE Malsick, JZ Woo, C Zhu, F Zhang, S Khandwala, ...
Nature communications 13 (1), 1128, 2022
812022
Genome‐wide annotation and quantitation of translation by ribosome profiling
NT Ingolia, GA Brar, S Rouskin, AM McGeachy, JS Weissman
Current protocols in molecular biology 103 (1), 4.18. 1-4.18. 19, 2013
802013
Insights into the secondary structural ensembles of the full SARS-CoV-2 RNA genome in infected cells
TCT Lan, MF Allan, LE Malsick, S Khandwala, SSY Nyeo, Y Sun, JU Guo, ...
Biorxiv, 2020.06. 29.178343, 2021
752021
Life span extension by glucose restriction is abrogated by methionine supplementation: Cross-talk between glucose and methionine and implication of methionine as a key …
K Zou, S Rouskin, K Dervishi, MA McCormick, A Sasikumar, C Deng, ...
Science advances 6 (32), eaba1306, 2020
592020
An intranasal ASO therapeutic targeting SARS-CoV-2
C Zhu, JY Lee, JZ Woo, L Xu, X Nguyenla, LH Yamashiro, F Ji, SB Biering, ...
Nature communications 13 (1), 4503, 2022
432022
Viral RNA structure analysis using DMS-MaPseq
P Tomezsko, H Swaminathan, S Rouskin
Methods 183, 68-75, 2020
262020
HnRNP A1/A2 proteins assemble onto 7SK snRNA via context dependent interactions
L Luo, LY Chiu, A Sugarman, P Gupta, S Rouskin, BS Tolbert
Journal of molecular biology 433 (9), 166885, 2021
182021
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