| Topoisomerase 3α is required for decatenation and segregation of human mtDNA TJ Nicholls, CA Nadalutti, E Motori, EW Sommerville, GS Gorman, S Basu, ... Molecular cell 69 (1), 9-23. e6, 2018 | 134 | 2018 |
| Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom S Basu, S Patil, D Mapleson, MT Russo, L Vitale, C Fevola, F Maumus, ... New Phytologist 215 (1), 140-156, 2017 | 124 | 2017 |
| Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs F Musacchia, S Basu, G Petrosino, M Salvemini, R Sanges Bioinformatics 31 (13), 2199-2201, 2015 | 115 | 2015 |
| Comprehensive transcriptome analysis of Crocus sativus for discovery and expression of genes involved in apocarotenoid biosynthesis SA Baba, T Mohiuddin, S Basu, MK Swarnkar, AH Malik, ZA Wani, ... BMC genomics 16, 1-14, 2015 | 96 | 2015 |
| Comparative analyses of genotype dependent expressed sequence tags and stress-responsive transcriptome of chickpea wilt illustrate predicted and unexpected genes and novel … N Ashraf, D Ghai, P Barman, S Basu, N Gangisetty, MK Mandal, ... BMC genomics 10, 1-21, 2009 | 74 | 2009 |
| Grazer-induced transcriptomic and metabolomic response of the chain-forming diatom Skeletonema marinoi A Amato, V Sabatino, GM Nylund, J Bergkvist, S Basu, MX Andersson, ... The ISME journal 12 (6), 1594-1604, 2018 | 60 | 2018 |
| Copy-choice recombination during mitochondrial L-strand synthesis causes DNA deletions Ö Persson, Y Muthukumar, S Basu, L Jenninger, JP Uhler, AK Berglund, ... Nature communications 10 (1), 759, 2019 | 52 | 2019 |
| Accurate mapping of mitochondrial DNA deletions and duplications using deep sequencing S Basu, X Xie, JP Uhler, C Hedberg-Oldfors, D Milenkovic, OR Baris, ... PLoS Genetics 16 (12), e1009242, 2020 | 46 | 2020 |
| Comparative proteomics reveals a role for seed storage protein AmA1 in cellular growth, development, and nutrient accumulation L Agrawal, K Narula, S Basu, S Shekhar, S Ghosh, A Datta, ... Journal of Proteome Research 12 (11), 4904-4930, 2013 | 38 | 2013 |
| Somatic mutation patterns in hemizygous genomic regions unveil purifying selection during tumor evolution J Van den Eynden, S Basu, E Larsson PLoS genetics 12 (12), e1006506, 2016 | 32 | 2016 |
| Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development R Sanges, Y Hadzhiev, M Gueroult-Bellone, A Roure, M Ferg, N Meola, ... Nucleic Acids Research 41 (6), 3600-3618, 2013 | 30 | 2013 |
| VarGenius executes cohort-level DNA-seq variant calling and annotation and allows to manage the resulting data through a PostgreSQL database F Musacchia, A Ciolfi, M Mutarelli, A Bruselles, R Castello, M Pinelli, ... BMC bioinformatics 19, 1-14, 2018 | 28 | 2018 |
| A ceRNA circuitry involving the long noncoding RNA Klhl14-AS, Pax8, and Bcl2 drives thyroid carcinogenesis SC Credendino, ML Bellone, N Lewin, E Amendola, R Sanges, S Basu, ... Cancer research 79 (22), 5746-5757, 2019 | 24 | 2019 |
| Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements S Basu, F Müller, R Sanges BMC bioinformatics 14, 1-17, 2013 | 23 | 2013 |
| Mitochondrial DNA variants in inclusion body myositis characterized by deep sequencing C Hedberg‐Oldfors, U Lindgren, S Basu, K Visuttijai, C Lindberg, ... Brain Pathology 31 (3), e12931, 2021 | 21 | 2021 |
| Integrative network analyses of wilt transcriptome in chickpea reveal genotype dependent regulatory hubs in immunity and susceptibility N Ashraf, S Basu, K Narula, S Ghosh, R Tayal, N Gangisetty, S Biswas, ... Scientific reports 8 (1), 6528, 2018 | 16 | 2018 |
| The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate … S Basu, Y Hadzhiev, G Petrosino, C Nepal, J Gehrig, O Armant, M Ferg, ... Scientific Reports 6 (1), 33210, 2016 | 15 | 2016 |
| Tissue-and cell type-specific expression of the long noncoding RNA Klhl14-AS in mouse SC Credendino, N Lewin, M De Oliveira, S Basu, B D’Andrea, ... International journal of genomics 2017, 2017 | 14 | 2017 |
| Deorphanization of novel biogenic amine-gated ion channels identifies a new serotonin receptor for learning J Morud, I Hardege, H Liu, T Wu, MK Choi, S Basu, Y Zhang, WR Schafer Current Biology 31 (19), 4282-4292. e6, 2021 | 13 | 2021 |
| Deep sequencing of mitochondrial DNA and characterization of a novel POLG mutation in a patient with arPEO C Hedberg-Oldfors, B Macao, S Basu, C Lindberg, B Peter, D Erdinc, ... Neurology: Genetics 6 (1), e391, 2020 | 11 | 2020 |
