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Jia Wen
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Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1784, 2019
7532019
A deep auto-encoder model for gene expression prediction
R Xie, J Wen, A Quitadamo, J Cheng, X Shi
BMC genomics 18, 39-49, 2017
1222017
Cell-type-specific 3D epigenomes in the developing human cortex
Nature, 2020
1152020
Human-specific tandem repeat expansion and differential gene expression during primate evolution
A Sulovari, R Li, PA Audano, D Porubsky, MR Vollger, GA Logsdon, ...
Proceedings of the National Academy of Sciences 116 (46), 23243-23253, 2019
952019
Identification of domestication-related loci associated with flowering time and seed size in soybean with the RAD-seq genotyping method
YMZ Ling Zhou, Shi-Bo Wang,Jianbo Jian, Qing-Chun Geng, Jia Wen, Qijian Song ...
Scientific Report, 2015
742015
Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia
M Halvorsen, R Huh, N Oskolkov, J Wen, S Netotea, P Giusti-Rodriguez, ...
Nature communications 11 (1), 1842, 2020
732020
SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data
M Yu, A Abnousi, Y Zhang, G Li, L Lee, Z Chen, R Fang, TM Lagler, ...
Nature methods 18 (9), 1056-1059, 2021
482021
Leveraging base-pair mammalian constraint to understand genetic variation and human disease
PF Sullivan, JRS Meadows, S Gazal, BDN Phan, X Li, DP Genereux, ...
Science 380 (6643), eabn2937, 2023
372023
Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies
Q Sun, M Graff, B Rowland, J Wen, L Huang, TW Miller-Fleming, ...
Journal of human genetics 67 (2), 87-93, 2022
312022
Group spike-and-slab lasso generalized linear models for disease prediction and associated genes detection by incorporating pathway information
Z Tang, Y Shen, Y Li, X Zhang, J Wen, C Qian, W Zhuang, X Shi, N Yi
Bioinformatics 34 (6), 901-910, 2018
312018
A comprehensive comparison on cell-type composition inference for spatial transcriptomics data
J Chen, W Liu, T Luo, Z Yu, M Jiang, J Wen, GP Gupta, P Giusti, H Zhu, ...
Briefings in Bioinformatics 23 (4), bbac245, 2022
252022
Genetic dissection of heterosis using epistatic association mapping in a partial NCII mating design
YMZ Jia Wen, Xinwang Zhao, Guorong Wu, Dan Xiang, Qing Liu, Su-Hong Bu, Can ...
Scientific Reports, 2015
232015
Association of CNVs with methylation variation
X Shi, S Radhakrishnan, J Wen, JY Chen, J Chen, BA Lam, RE Mills, ...
NPJ genomic medicine 5 (1), 41, 2020
212020
Identification and validation of candidate genes associated with domesticated and improved traits in soybean
L Zhou, L Luo, JF Zuo, L Yang, L Zhang, X Guang, Y Niu, J Jian, QC Geng, ...
The plant genome 9 (2), plantgenome2015.09.0090, 2016
212016
Multi-platform discovery of haplotype-resolved structural variation in human genomes. Nat Commun. 2019; 10 (1): 1784
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Epub 2019/04/18. https://doi. org/10.1038/s41467-018-08148-z PMID: 30992455, 0
19
From GWAS variant to function: A study of∼ 148,000 variants for blood cell traits
Q Sun, CA Crowley, L Huang, J Wen, J Chen, EL Bao, PL Auer, G Lettre, ...
Human Genetics and Genomics Advances 3 (1), 2022
182022
Multi-platform discovery of haplotype-resolved structural variation in human genomes. Nat. Commun. 10, 1784
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
182019
Leveraging TOPMed imputation server and constructing a cohort-specific imputation reference panel to enhance genotype imputation among cystic fibrosis patients
Q Sun, W Liu, JD Rosen, L Huang, RG Pace, H Dang, PJ Gallins, EE Blue, ...
Human Genetics and Genomics Advances 3 (2), 2022
152022
Interacted QTL Mapping in Partial NCII Design Provides Evidences for Breeding by Design
YMZ Su Hong Bu, Zhao Xinwang, Can Yi, Jia Wen, Tu Jinxing
PLoS One, 2015
132015
Rare tandem repeat expansions associate with genes involved in synaptic and neuronal signaling functions in schizophrenia
J Wen, B Trost, W Engchuan, M Halvorsen, LM Pallotto, A Mitina, ...
Molecular Psychiatry 28 (1), 475-482, 2023
122023
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