Metagenome-wide association analysis identifies microbial determinants of post-antibiotic ecological recovery in the gut KR Chng, TS Ghosh, YH Tan, T Nandi, IR Lee, AHQ Ng, C Li, ... Nature ecology & evolution 4 (9), 1256-1267, 2020 | 105 | 2020 |
Critical assessment of genome-scale metabolic networks: the need for a unified standard A Ravikrishnan, K Raman Briefings in bioinformatics 16 (6), 1057-1068, 2015 | 89 | 2015 |
Atopic dermatitis microbiomes stratify into ecologic dermotypes enabling microbial virulence and disease severity ASL Tay, C Li, T Nandi, KR Chng, AK Andiappan, VS Mettu, C de Cevins, ... Journal of Allergy and Clinical Immunology 147 (4), 1329-1340, 2021 | 35 | 2021 |
Enumerating all possible biosynthetic pathways in metabolic networks A Ravikrishnan, M Nasre, K Raman Scientific reports 8 (1), 9932, 2018 | 35 | 2018 |
Investigating metabolic interactions in a microbial co-culture through integrated modelling and experiments A Ravikrishnan, LM Blank, S Srivastava, K Raman Computational and Structural Biotechnology Journal 18, 1249-1258, 2020 | 34 | 2020 |
Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians JS Gounot, M Chia, D Bertrand, WY Saw, A Ravikrishnan, A Low, Y Ding, ... Nature Communications 13 (1), 6044, 2022 | 22 | 2022 |
Systems-level modelling of microbial communities: theory and practice A Ravikrishnan, K Raman CRC Press, 2018 | 17 | 2018 |
Long-term ecological and evolutionary dynamics in the gut microbiomes of carbapenemase-producing Enterobacteriaceae colonized subjects JTL Kang, JJY Teo, D Bertrand, A Ng, A Ravikrishnan, M Yong, OT Ng, ... Nature Microbiology 7 (10), 1516-1524, 2022 | 10 | 2022 |
Genome-scale model reconstruction of the methylotrophic yeast Ogataea polymorpha UW Liebal, BA Fabry, A Ravikrishnan, CVL Schedel, S Schmitz, LM Blank, ... BMC biotechnology 21, 1-8, 2021 | 9 | 2021 |
Metagenome-wide association analysis identifies microbial determinants of post-antibiotic ecological recovery in the gut. Nat Ecol Evol 4: 1256–1267 KR Chng, TS Ghosh, YH Tan, T Nandi, IR Lee, AHQ Ng, C Li, ... | 8 | 2020 |
Mutual Exclusion of Methanobrevibacter Species in the Human Gut Microbiota Facilitates Directed Cultivation of a Candidatus Methanobrevibacter Intestini … A Low, JKY Lee, JS Gounot, A Ravikrishnan, Y Ding, WY Saw, LWL Tan, ... Microbiology Spectrum 10 (4), e00849-22, 2022 | 7 | 2022 |
Profiling microbial communities in idiopathic granulomatous mastitis SS Ong, J Xu, CK Sim, AJ Khng, PJ Ho, PKW Kwan, A Ravikrishnan, ... International Journal of Molecular Sciences 24 (2), 1042, 2023 | 5 | 2023 |
BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures L Geistlinger, C Mirzayi, F Zohra, R Azhar, S Elsafoury, C Grieve, ... Nature Biotechnology, 1-13, 2023 | 4 | 2023 |
BugSigDB: accelerating microbiome research through systematic comparison to published microbial signatures L Geistlinger, C Mirzayi, F Zohra, R Azhar, S Elsafoury, C Grieve, ... medRxiv, 2022.10. 24.22281483, 2022 | 2 | 2022 |
Unraveling microbial interactions in the gut microbiome A Ravikrishnan, K Raman BioRxiv, 2021.05. 17.444446, 2021 | 2 | 2021 |
Hypervirulent Klebsiella pneumoniae employs genomic island encoded toxins against bacterial competitors in the gut YH Tan, P Arros, C Berríos-Pastén, I Wijaya, WHW Chu, Y Chen, ... The ISME Journal 18 (1), wrae054, 2024 | | 2024 |
Life stage impact on the human skin ecosystem: lipids and the microbial community MP Pagac, B Davient, A Ravikrishnan, E Chua, A Irudayaswamy, ... bioRxiv, 2024.01. 03.573871, 2024 | | 2024 |
Method and composition for treating or decreasing gut microbiome dysbiosis induced by a prior antibiotic treatment KR Chng, A Ravikrishnan, N Nagarajan US Patent App. 17/367,837, 2023 | | 2023 |
16S rRNA sequencing for profiling microbial communities in idiopathic granulomatous mastitis SS Ong, J Xu, CK Sim, AJ Khng, PJ Ho, PKW Kwan, A Ravikrishnan, ... bioRxiv, 2022.09. 30.510425, 2022 | | 2022 |
Genome scale model reconstruction of the methylotrophic yeast Ogataea polymorpha S Schmitz, UW Liebal, A Ravikrishnan, CVL Schedel, LM Blank, BE Ebert | | 2019 |