Andrey Alexeyenko

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Joakim LundebergSciLifeLab, KTH Royal Institute of TechnologyVerified email at scilifelab.se
Vladimir KashubaInstitute of Molecular Biology and Genetics, NAS of UkraineVerified email at imbg.org.ua
Woojoo LeeDepartment of Public Health Sciences, Graduate School of Public Health, Seoul National UniversityVerified email at snu.ac.kr
Twana AlkasaliasKarolinska InstitutetVerified email at ki.se
Kim WongWellcome Trust Sanger InstituteVerified email at sanger.ac.uk
Adam LorchCenter for Stem Cell and Regenerative Medicine, University of Illinois-ChicagoVerified email at uic.edu
Donald MoermanUniversity of British ColumbiaVerified email at zoology.ubc.ca
Steven JonesBC Cancer, Simon Fraser University, University of British ColumbiaVerified email at bcgsc.ca
David BaillieEmeritus professor molecular biology and biochemistry simon fraser universityVerified email at sfu.ca
Rebecca Worsley HuntMax-Delbrück-Centrum für Molekulare MedizinVerified email at mdc-berlin.de
Zhongying ZhaoProfessor of Biology Department, Hong Kong Baptist UniversityVerified email at hkbu.edu.hk
Marco MarraBC Cancer Agency; University of British Columbia, Genome Sciences CentreVerified email at bcgsc.ca
Nathaniel Robert StreetProfessor, Umeå Plant Science Centre, Department of Plant Physiology, Umeå UniversityVerified email at umu.se
Emma LundbergAssociate Professor of Bioengineering and Pathology, Stanford UniversityVerified email at scilifelab.se
Johan ReimegårdBioinformatic researcher at Science for Life Laboratory, Uppsala UniversityVerified email at scilifelab.se
Fredrik SalménKTH Royal Institute of TechnologyVerified email at scilifelab.se
Patrik StåhlKTH, Royal Institute of TechnologyVerified email at kth.se
Vincent BuloneFlinders UniversityVerified email at flinders.edu.au
Lauren McKeeKungliga Tekniska HögskolanVerified email at kth.se
Chanaka MannapperumaAstraZenecaVerified email at astrazeneca.com

Andrey Alexeyenko

Science For Life Laboratory, Stockholm

Verified email at scilifelab.se - Homepage

Interaction networks systems biology biomarkers


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The Norway spruce genome sequence and conifer genome evolution B Nystedt, NR Street, A Wetterbom, A Zuccolo, YC Lin, DG Scofield, ... Nature 497 (7451), 579-584, 2013	1589	2013
High-throughput in vivo analysis of gene expression in Caenorhabditis elegans R Hunt-Newbury, R Viveiros, R Johnsen, A Mah, D Anastas, L Fang, ... PLoS biology 5 (9), e237, 2007	492	2007
Automatic clustering of orthologs and inparalogs shared by multiple proteomes A Alexeyenko, I Tamas, G Liu, ELL Sonnhammer Bioinformatics 22 (14), e9-e15, 2006	313	2006
Global networks of functional coupling in eukaryotes from comprehensive data integration A Alexeyenko, ELL Sonnhammer Genome research 19 (6), 1107-1116, 2009	190	2009
Spatially resolved transcriptome profiling in model plant species S Giacomello, F Salmén, BK Terebieniec, S Vickovic, JF Navarro, ... Nature plants 3 (6), 1-11, 2017	167	2017
Network enrichment analysis: extension of gene-set enrichment analysis to gene networks A Alexeyenko, W Lee, M Pernemalm, J Guegan, P Dessen, V Lazar, ... BMC bioinformatics 13, 1-11, 2012	150	2012
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge CA Brownstein, AH Beggs, N Homer, B Merriman, TW Yu, KC Flannery, ... Genome biology 15, 1-18, 2014	125	2014
Inhibition of tumor cell proliferation and motility by fibroblasts is both contact and soluble factor dependent T Alkasalias, E Flaberg, V Kashuba, A Alexeyenko, T Pavlova, ... Proceedings of the National Academy of Sciences 111 (48), 17188-17193, 2014	112	2014
Distinguishing between driver and passenger mutations in individual cancer genomes by network enrichment analysis SK Merid, D Goranskaya, A Alexeyenko BMC bioinformatics 15, 1-21, 2014	84	2014
Expression of scavenger receptor MARCO defines a targetable tumor‐associated macrophage subset in non‐small cell lung cancer L La Fleur, VF Boura, A Alexeyenko, A Berglund, V Pontén, JSM Mattsson, ... International Journal of Cancer 143 (7), 1741-1752, 2018	83	2018
Comparative interactomics with Funcoup 2.0 A Alexeyenko, T Schmitt, A Tjärnberg, D Guala, O Frings, ... Nucleic acids research 40 (D1), D821-D828, 2012	67	2012
Analysis of lipid pathway genes indicates association of sequence variation near SREBF1/TOM1L2/ATPAF2 with dementia risk CA Reynolds, MG Hong, UK Eriksson, K Blennow, F Wiklund, ... Human molecular genetics 19 (10), 2068-2078, 2010	65	2010
Identification of novel epigenetic markers of prostate cancer by NotI‐microarray analysis AA Dmitriev, EE Rosenberg, GS Krasnov, GV Gerashchenko, ... Disease markers 2015 (1), 241301, 2015	61	2015
Dynamic zebrafish interactome reveals transcriptional mechanisms of dioxin toxicity A Alexeyenko, DM Wassenberg, EK Lobenhofer, J Yen, E Linney, ... PloS one 5 (5), e10465, 2010	60	2010
Genome-wide pathway analysis implicates intracellular transmembrane protein transport in Alzheimer disease MG Hong, A Alexeyenko, JC Lambert, P Amouyel, JA Prince Journal of human genetics 55 (10), 707-709, 2010	58	2010
Statistical assessment of crosstalk enrichment between gene groups in biological networks T McCormack, O Frings, A Alexeyenko, ELL Sonnhammer PloS one 8 (1), e54945, 2013	52	2013
Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines P Akan, A Alexeyenko, PI Costea, L Hedberg, BW Solnestam, S Lundin, ... Genome medicine 4, 1-13, 2012	50	2012
Novel genes and pathways modulated by syndecan-1: implications for the proliferation and cell-cycle regulation of malignant mesothelioma cells T Szatmári, F Mundt, G Heidari-Hamedani, F Zong, E Ferolla, ... PloS one 7 (10), e48091, 2012	48	2012
RhoA knockout fibroblasts lose tumor-inhibitory capacity in vitro and promote tumor growth in vivo T Alkasalias, A Alexeyenko, K Hennig, F Danielsson, RJ Lebbink, ... Proceedings of the National Academy of Sciences 114 (8), E1413-E1421, 2017	40	2017
Overview and comparison of ortholog databases A Alexeyenko, J Lindberg, Å Pérez-Bercoff, ELL Sonnhammer Drug Discovery Today: Technologies 3 (2), 137-143, 2006	40	2006

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