|An atlas of active enhancers across human cell types and tissues|
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455-461, 2014
|The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)|
R Ming, S Hou, Y Feng, Q Yu, A Dionne-Laporte, JH Saw, P Senin, ...
Nature 452 (7190), 991-996, 2008
|A promoter-level mammalian expression atlas|
ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL De Hoon, V Haberle, ...
Nature 507 (7493), 462-470, 2014
|An atlas of human long non-coding RNAs with accurate 5′ ends|
CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ...
Nature 543 (7644), 199-204, 2017
|Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes|
AM Burroughs, KN Allen, D Dunaway-Mariano, L Aravind
Journal of molecular biology 361 (5), 1003-1034, 2006
|A comprehensive survey of 3′ animal miRNA modification events and a possible role for 3′ adenylation in modulating miRNA targeting effectiveness|
AM Burroughs, Y Ando, MJL de Hoon, Y Tomaru, T Nishibu, R Ukekawa, ...
Genome research 20 (10), 1398-1410, 2010
|Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin|
AM Burroughs, Y Ando, ML de Hoon, Y Tomaru, H Suzuki, Y Hayashizaki, ...
RNA biology 8 (1), 158-177, 2011
|Chromatin-associated RNA interference components contribute to transcriptional regulation in Drosophila|
FM Cernilogar, MC Onorati, GO Kothe, AM Burroughs, KM Parsi, ...
Nature 480 (7377), 391-395, 2011
|An integrated expression atlas of miRNAs and their promoters in human and mouse|
D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ...
Nature biotechnology 35 (9), 872-878, 2017
|The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like β-grasp domains|
LM Iyer, AM Burroughs, L Aravind
Genome biology 7 (7), R60, 2006
|Small but versatile: the extraordinary functional and structural diversity of the β-grasp fold|
AM Burroughs, S Balaji, LM Iyer, L Aravind
Biology direct 2 (1), 18, 2007
|Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing|
V Anantharaman, KS Makarova, AM Burroughs, EV Koonin, L Aravind
Biology direct 8 (1), 15, 2013
|Anatomy of the E2 ligase fold: implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation|
AM Burroughs, M Jaffee, LM Iyer, L Aravind
Journal of structural biology 162 (2), 205-218, 2008
|PAPD5-mediated 3′ adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease|
J Boele, H Persson, JW Shin, Y Ishizu, IS Newie, R Søkilde, SM Hawkins, ...
Proceedings of the National Academy of Sciences 111 (31), 11467-11472, 2014
|Unraveling the biochemistry and provenance of pupylation: a prokaryotic analog of ubiquitination|
L Iyer, AM Burroughs, L Aravind
Biology direct 3 (1), 45, 2008
|Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation|
H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ...
Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014
|Natural history of the E1‐like superfamily: implication for adenylation, sulfur transfer, and ubiquitin conjugation|
AM Burroughs, LM Iyer, L Aravind
Proteins: Structure, Function, and Bioinformatics 75 (4), 895-910, 2009
|Amidoligases with ATP-grasp, glutamine synthetase-like and acetyltransferase-like domains: synthesis of novel metabolites and peptide modifications of proteins|
LM Iyer, S Abhiman, AM Burroughs, L Aravind
Molecular bioSystems 5 (12), 1636-1660, 2009
|Comparative genomics and evolutionary trajectories of viral ATP dependent DNA-packaging systems|
A Burroughs, L Iyer, L Aravind
Genome dynamics 3 (R), 48, 2007
|Comparative genomic analyses reveal a vast, novel network of nucleotide-centric systems in biological conflicts, immunity and signaling|
AM Burroughs, D Zhang, DE Schäffer, LM Iyer, L Aravind
Nucleic acids research 43 (22), 10633-10654, 2015