Daisuke Kihara
Daisuke Kihara
Professor of Biological Sciences and Computer Science, Showalter University Faculty Scholar, Purdue
E-mail confirmado em purdue.edu - Página inicial
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A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
8162013
Limitations and potentials of current motif discovery algorithms
J Hu, B Li, D Kihara
Nucleic acids research 33 (15), 4899-4913, 2005
2942005
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 1-19, 2016
2932016
Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm
J Skolnick, D Kihara, Y Zhang
Proteins: Structure, Function, and Bioinformatics 56 (3), 502-518, 2004
1982004
TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraints
D Kihara, H Lu, A Kolinski, J Skolnick
Proceedings of the National Academy of Sciences 98 (18), 10125-10130, 2001
1752001
Local energy landscape flattening: parallel hyperbolic Monte Carlo sampling of protein folding
Y Zhang, D Kihara, J Skolnick
Proteins: Structure, Function, and Bioinformatics 48 (2), 192-201, 2002
1712002
Enhanced automated function prediction using distantly related sequences and contextual association by PFP
T Hawkins, S Luban, D Kihara
Protein Science 15 (6), 1550-1556, 2006
1632006
Defrosting the frozen approximation: PROSPECTOR—a new approach to threading
J Skolnick, D Kihara
Proteins: structure, function, and bioinformatics 42 (3), 319-331, 2001
1512001
Protein-protein docking using region-based 3D Zernike descriptors
V Venkatraman, YD Yang, L Sael, D Kihara
BMC bioinformatics 10 (1), 1-21, 2009
1432009
Community-wide assessment of protein-interface modeling suggests improvements to design methodology
SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ...
Journal of molecular biology 414 (2), 289-302, 2011
1392011
The PDB is a covering set of small protein structures
D Kihara, J Skolnick
Journal of molecular biology 334 (4), 793-802, 2003
1372003
PFP: Automated prediction of gene ontology functional annotations with confidence scores using protein sequence data
T Hawkins, M Chitale, S Luban, D Kihara
Proteins: Structure, Function, and Bioinformatics 74 (3), 566-582, 2009
1322009
Structure and inhibition of EV-D68, a virus that causes respiratory illness in children
Y Liu, J Sheng, A Fokine, G Meng, WH Shin, F Long, RJ Kuhn, D Kihara, ...
Science 347 (6217), 71-74, 2015
1312015
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1292016
Fast protein tertiary structure retrieval based on global surface shape similarity
L Sael, B Li, D La, Y Fang, K Ramani, R Rustamov, D Kihara
Proteins: Structure, Function, and Bioinformatics 72 (4), 1259-1273, 2008
1262008
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
1252019
The effect of long‐range interactions on the secondary structure formation of proteins
D Kihara
Protein Science 14 (8), 1955-1963, 2005
1172005
Function prediction of uncharacterized proteins
T Hawkins, D Kihara
Journal of bioinformatics and computational biology 5 (01), 1-30, 2007
1082007
Generalized comparative modeling (GENECOMP): a combination of sequence comparison, threading, and lattice modeling for protein structure prediction and refinement
A Kolinski, MR Betancourt, D Kihara, P Rotkiewicz, J Skolnick
Proteins: Structure, Function, and Bioinformatics 44 (2), 133-149, 2001
1042001
ESG: extended similarity group method for automated protein function prediction
M Chitale, T Hawkins, C Park, D Kihara
Bioinformatics 25 (14), 1739-1745, 2009
982009
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