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Rachel Kolodny
Rachel Kolodny
E-mail confirmado em cs.haifa.ac.il
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Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures
R Kolodny, P Koehl, M Levitt
Journal of molecular biology 346 (4), 1173-1188, 2005
3642005
Small libraries of protein fragments model native protein structures accurately
R Kolodny, P Koehl, L Guibas, M Levitt
Journal of molecular biology 323 (2), 297-307, 2002
2562002
Protein structure comparison: implications for the nature of ‘fold space’, and structure and function prediction
R Kolodny, D Petrey, B Honig
Current opinion in structural biology 16 (3), 393-398, 2006
1862006
Potential antigenic cross-reactivity between severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and dengue viruses
Y Lustig, S Keler, R Kolodny, N Ben-Tal, D Atias-Varon, E Shlush, ...
Clinical Infectious Diseases 73 (7), e2444-e2449, 2021
1802021
Approximate protein structural alignment in polynomial time
R Kolodny, N Linial
Proceedings of the National Academy of Sciences 101 (33), 12201-12206, 2004
1602004
Sequence‐similar, structure‐dissimilar protein pairs in the PDB
M Kosloff, R Kolodny
Proteins: Structure, Function, and Bioinformatics 71 (2), 891-902, 2008
1532008
FragBag, an accurate representation of protein structure, retrieves structural neighbors from the entire PDB quickly and accurately
I Budowski-Tal, Y Nov, R Kolodny
Proceedings of the National Academy of Sciences 107 (8), 3481-3486, 2010
1322010
Inverse kinematics in biology: the protein loop closure problem
R Kolodny, L Guibas, M Levitt, P Koehl
The International Journal of Robotics Research 24 (2-3), 151-163, 2005
1202005
On the universe of protein folds
R Kolodny, L Pereyaslavets, AO Samson, M Levitt
Annual review of biophysics 42, 559-582, 2013
972013
Global view of the protein universe
S Nepomnyachiy, N Ben-Tal, R Kolodny
Proceedings of the National Academy of Sciences 111 (32), 11691-11696, 2014
782014
Maps of protein structure space reveal a fundamental relationship between protein structure and function
M Osadchy, R Kolodny
Proceedings of the National Academy of Sciences 108 (30), 12301-12306, 2011
762011
On the emergence of P-Loop NTPase and Rossmann enzymes from a Beta-Alpha-Beta ancestral fragment
LM Longo, J Jabłońska, P Vyas, M Kanade, R Kolodny, N Ben-Tal, ...
Elife 9, e64415, 2020
632020
Complex evolutionary footprints revealed in an analysis of reused protein segments of diverse lengths
S Nepomnyachiy, N Ben-Tal, R Kolodny
Proceedings of the National Academy of Sciences 114 (44), 11703-11708, 2017
622017
Using an alignment of fragment strings for comparing protein structures
I Friedberg, T Harder, R Kolodny, E Sitbon, Z Li, A Godzik
Bioinformatics 23 (2), e219-e224, 2007
562007
Bridging themes: short protein segments found in different architectures
R Kolodny, S Nepomnyachiy, DS Tawfik, N Ben-Tal
Molecular biology and evolution 38 (6), 2191-2208, 2021
452021
Protein decoy assembly using short fragments under geometric constraints
R Kolodny, M Levitt
Biopolymers: Original Research on Biomolecules 68 (3), 278-285, 2003
392003
Evolutionary pathways of repeat protein topology in bacterial outer membrane proteins
MW Franklin, S Nepomnyachyi, R Feehan, N Ben-Tal, R Kolodny, ...
Elife 7, e40308, 2018
282018
Faster algorithms for optimal multiple sequence alignment based on pairwise comparisons
Y Bilu, PK Agarwal, R Kolodny
IEEE/ACM Transactions on Computational Biology and Bioinformatics 3 (4), 408-422, 2006
282006
On the evolution of protein–adenine binding
A Narunsky, A Kessel, R Solan, V Alva, R Kolodny, N Ben-Tal
Proceedings of the National Academy of Sciences 117 (9), 4701-4709, 2020
272020
CyToStruct: augmenting the network visualization of cytoscape with the power of molecular viewers
S Nepomnyachiy, N Ben-Tal, R Kolodny
Structure 23 (5), 941-948, 2015
252015
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Artigos 1–20