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Alan K. Jarmusch
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
129642019
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
9202018
Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature methods 17 (9), 905-908, 2020
7832020
Reproducible molecular networking of untargeted mass spectrometry data using GNPS
AT Aron, EC Gentry, KL McPhail, LF Nothias, M Nothias-Esposito, ...
Nature protocols 15 (6), 1954-1991, 2020
3982020
Ambient mass spectrometry for the intraoperative molecular diagnosis of human brain tumors
LS Eberlin, I Norton, D Orringer, IF Dunn, X Liu, JL Ide, AK Jarmusch, ...
Proceedings of the National Academy of Sciences 110 (5), 1611-1616, 2013
3242013
Lipid and metabolite profiles of human brain tumors by desorption electrospray ionization-MS
AK Jarmusch, V Pirro, Z Baird, EM Hattab, AA Cohen-Gadol, RG Cooks
Proceedings of the National Academy of Sciences 113 (6), 1486-1491, 2016
2172016
Ambient ionization mass spectrometry for point-of-care diagnostics and other clinical measurements
CR Ferreira, KE Yannell, AK Jarmusch, V Pirro, Z Ouyang, RG Cooks
Clinical chemistry 62 (1), 99-110, 2016
1992016
Mass spectrometry-based metabolomics in microbiome investigations
A Bauermeister, H Mannochio-Russo, LV Costa-Lotufo, AK Jarmusch, ...
Nature Reviews Microbiology 20 (3), 143-160, 2022
1812022
Mass spectrometry searches using MASST
M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ...
Nature biotechnology 38 (1), 23-26, 2020
1782020
Intraoperative assessment of tumor margins during glioma resection by desorption electrospray ionization-mass spectrometry
V Pirro, CM Alfaro, AK Jarmusch, EM Hattab, AA Cohen-Gadol, RG Cooks
Proceedings of the National Academy of Sciences 114 (26), 6700-6705, 2017
1772017
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment
R Schmid, D Petras, LF Nothias, M Wang, AT Aron, A Jagels, H Tsugawa, ...
Nature communications 12 (1), 3832, 2021
1512021
Polyhydroxyanthraquinones as Quorum Sensing Inhibitors from the Guttates of Penicillium restrictum and Their Analysis by Desorption Electrospray Ionization Mass Spectrometry
M Figueroa,AK Jarmusch,HA Raja,T El-Elimat,JS Kavanaugh,AR Horswill,RG Cooks ...
Journal of Natural Products, 2014
1502014
Rapid discrimination of bacteria by paper spray mass spectrometry
AM Hamid, AK Jarmusch, V Pirro, DH Pincus, BG Clay, G Gervasi, ...
Analytical chemistry 86 (15), 7500-7507, 2014
1212014
Direct drug analysis from oral fluid using medical swab touch spray mass spectrometry
V Pirro, AK Jarmusch, M Vincenti, RG Cooks
Analytica Chimica Acta 861, 47-54, 2015
1042015
Touch spray mass spectrometry for in situ analysis of complex samples
K Kerian, A Jarmusch, RG Cooks
Analyst, 2714-2720, 2014
1032014
Detection of strep throat causing bacterium directly from medical swabs by touch spray-mass spectrometry
AK Jarmusch, V Pirro, KS Kerian, RG Cooks
Analyst 139 (19), 4785-4789, 2014
99*2014
Differentiation of prostate cancer from normal tissue in radical prostatectomy specimens by desorption electrospray ionization and touch spray ionization mass spectrometry
KS Kerian, AK Jarmusch, V Pirro, MO Koch, TA Masterson, L Cheng, ...
Analyst 140 (4), 1090-1098, 2015
892015
ReDU: a framework to find and reanalyze public mass spectrometry data
AK Jarmusch, M Wang, CM Aceves, RS Advani, S Aguirre, AA Aksenov, ...
Nature Methods 17 (9), 901-904, 2020
822020
Coupling targeted and untargeted mass spectrometry for metabolome-microbiome-wide association studies of human fecal samples
AV Melnik, RR da Silva, ER Hyde, AA Aksenov, F Vargas, A Bouslimani, ...
Analytical chemistry 89 (14), 7549-7559, 2017
802017
From single cells to our planet—recent advances in using mass spectrometry for spatially resolved metabolomics
D Petras, AK Jarmusch, PC Dorrestein
Current opinion in chemical biology 36, 24-31, 2017
802017
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