| Computer Simulations and Image Processing Reveal Length-Dependent Pulling Force as the Primary Mechanism for C. elegans Male Pronuclear Migration A Kimura, S Onami Developmental cell 8 (5), 765-775, 2005 | 156 | 2005 |
| Improving spinning disk confocal microscopy by preventing pinhole cross-talk for intravital imaging T Shimozawa, K Yamagata, T Kondo, S Hayashi, A Shitamukai, D Konno, ... Proceedings of the National Academy of Sciences 110 (9), 3399-3404, 2013 | 99 | 2013 |
| REMBI: Recommended Metadata for Biological Images—enabling reuse of microscopy data in biology U Sarkans, W Chiu, L Collinson, MC Darrow, J Ellenberg, D Grunwald, ... Nature methods 18 (12), 1418-1422, 2021 | 77 | 2021 |
| Local cortical pulling-force repression switches centrosomal centration and posterior displacement in C. elegans A Kimura, S Onami J Cell Biol 179 (7), 1347-1354, 2007 | 70 | 2007 |
| Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking S Hamahashi, S Onami, H Kitano BMC bioinformatics 6 (1), 125, 2005 | 68 | 2005 |
| Bio-calculus: Its concept and molecular interaction M Nagasaki, S Onami, S Miyano, H Kitano Genome Informatics 10, 133-143, 1999 | 65 | 1999 |
| A gene network inference method from continuous-value gene expression data of wild-type and mutants KM Kyoda, S Onami, M Morohashi, H Kitano Genome Informatics 11, 196-204, 2000 | 61 | 2000 |
| A global view of standards for open image data formats and repositories JR Swedlow, P Kankaanpää, U Sarkans, W Goscinski, G Galloway, ... Nature Methods 18 (12), 1440-1446, 2021 | 57 | 2021 |
| QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy G Nelson, U Boehm, S Bagley, P Bajcsy, J Bischof, CM Brown, A Dauphin, ... Journal of microscopy 284 (1), 56-73, 2021 | 49 | 2021 |
| SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena Y Tohsato, KHL Ho, K Kyoda, S Onami Bioinformatics 32 (22), 3471-3479, 2016 | 46 | 2016 |
| The sperm TRP-3 channel mediates the onset of a Ca2+ wave in the fertilized C. elegans oocyte J Takayama, S Onami Cell reports 15 (3), 625-637, 2016 | 37 | 2016 |
| WDDD: worm developmental dynamics database K Kyoda, E Adachi, E Masuda, Y Nagai, Y Suzuki, T Oguro, M Urai, R Arai, ... Nucleic acids research 41 (D1), D732-D737, 2012 | 37 | 2012 |
| PHi-C: deciphering Hi-C data into polymer dynamics S Shinkai, M Nakagawa, T Sugawara, Y Togashi, H Ochiai, R Nakato, ... NAR Genomics and Bioinformatics 2 (2), lqaa020, 2020 | 33 | 2020 |
| OME-Zarr: a cloud-optimized bioimaging file format with international community support J Moore, D Basurto-Lozada, S Besson, J Bogovic, J Bragantini, EM Brown, ... Histochemistry and Cell Biology 160 (3), 223-251, 2023 | 32 | 2023 |
| Condensed but liquid-like domain organization of active chromatin regions in living human cells T Nozaki, S Shinkai, S Ide, K Higashi, S Tamura, MA Shimazoe, ... Science Advances 9 (14), eadf1488, 2023 | 31 | 2023 |
| DBRF–MEGN method: an algorithm for deducing minimum equivalent gene networks from large-scale gene expression profiles of gene deletion mutants K Kyoda, K Baba, S Onami, H Kitano Bioinformatics 20 (16), 2662-2675, 2004 | 29 | 2004 |
| Towards automatic construction of cell-lineage of C. elegans from Nomarski DIC microscope images T Yasuda, H Bannai, S Onami, S Miyano, H Kitano Genome Informatics 10, 144-154, 1999 | 26 | 1999 |
| Single-nucleosome imaging reveals steady-state motion of interphase chromatin in living human cells S Iida, S Shinkai, Y Itoh, S Tamura, MT Kanemaki, S Onami, K Maeshima Science Advances 8 (22), eabn5626, 2022 | 24 | 2022 |
| Biologically constrained optimization based cell membrane segmentation in C. elegans embryos Y Azuma, S Onami BMC bioinformatics 18 (1), 307, 2017 | 22 | 2017 |
| Modeling microtubule-mediated forces and centrosome positioning in Caenorhabditis elegans embryos A Kimura, S Onami Methods in cell biology 97, 437-453, 2010 | 20 | 2010 |
