Joshua L. Adelman
Joshua L. Adelman
Unaffiliated; Formerly Research Assistant Professor, Department of Biological Sciences, University
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A Suite of Tutorials for the WESTPA Rare-Events Sampling Software [Article v1. 0]
AT Bogetti, B Mostofian, A Dickson, AJ Pratt, AS Saglam, PO Harrison, ...
Living journal of computational molecular science 1 (2), 2019
2072019
WESTPA: An interoperable, highly scalable software package for weighted ensemble simulation and analysis
MC Zwier, JL Adelman, JW Kaus, AJ Pratt, KF Wong, NB Rego, E Suárez, ...
Journal of chemical theory and computation 11 (2), 800-809, 2015
952015
Structure-guided simulations illuminate the mechanism of ATP transport through VDAC1
OP Choudhary, A Paz, JL Adelman, JP Colletier, J Abramson, M Grabe
Nature structural & molecular biology 21 (7), 626-632, 2014
802014
Constraint-based, Homology Model of the Extracellular Domain of the Epithelial Na+ Channel α Subunit Reveals a Mechanism of Channel Activation by Proteases
OB Kashlan, JL Adelman, S Okumura, BM Blobner, Z Zuzek, RP Hughey, ...
Journal of Biological Chemistry 286 (1), 649-660, 2011
752011
Efficient atomistic simulation of pathways and calculation of rate constants for a protein–peptide binding process: application to the MDM2 protein and an intrinsically …
MC Zwier, AJ Pratt, JL Adelman, JW Kaus, DM Zuckerman, LT Chong
The journal of physical chemistry letters 7 (17), 3440-3445, 2016
662016
Simulations of the Alternating Access Mechanism of the Sodium Symporter Mhp1
JL Adelman, AL Dale, MC Zwier, D Bhatt, LT Chong, DM Zuckerman, ...
Biophysical Journal 101 (10), 2399-2407, 2011
622011
Mechanochemistry of transcription termination factor Rho
JL Adelman, YJ Jeong, JC Liao, G Patel, DE Kim, G Oster, SS Patel
Molecular cell 22 (5), 611-621, 2006
622006
Accurate estimation of protein folding and unfolding times: beyond Markov state models
E Suárez, JL Adelman, DM Zuckerman
Journal of chemical theory and computation 12 (8), 3473-3481, 2016
562016
Simulating rare events using a weighted ensemble-based string method
JL Adelman, M Grabe
The Journal of chemical physics 138 (4), 01B616, 2013
472013
Stochastic steps in secondary active sugar transport
JL Adelman, C Ghezzi, P Bisignano, DDF Loo, S Choe, J Abramson, ...
Proceedings of the National Academy of Sciences 113 (27), E3960-E3966, 2016
302016
Structural Determinants of Water Permeation through the Sodium-Galactose Transporter vSGLT
JL Adelman, Y Sheng, S Choe, J Abramson, EM Wright, JM Rosenberg, ...
Biophysical Journal 106 (6), 1280-1289, 2014
252014
The mechanical properties of PCNA: Implications for the loading and function of a DNA sliding clamp
JL Adelman, JD Chodera, IFW Kuo, TF Miller III, D Barsky
Biophysical journal 98 (12), 3062, 2010
232010
Simulating current–voltage relationships for a narrow ion channel using the weighted ensemble method
JL Adelman, M Grabe
Journal of chemical theory and computation 11 (4), 1907-1918, 2015
172015
Expression of three topologically distinct membrane proteins elicits unique stress response pathways in the yeast Saccharomyces cerevisiae
TM Buck, R Jordan, J Lyons-Weiler, JL Adelman, PG Needham, ...
Physiological genomics 47 (6), 198-214, 2015
112015
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