Martin Swain
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Year
A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
MT Swain, IJ Tsai, SA Assefa, C Newbold, M Berriman, TD Otto
Nature protocols 7 (7), 1260-1284, 2012
2052012
Genome Sequence of the Tsetse Fly (Glossina morsitans): Vector of African Trypanosomiasis
International Glossina Genome Initiative, GM Attardo, PP Abila, JE Auma, ...
Science 344 (6182), 380-386, 2014
2032014
Whole genome analysis of a schistosomiasis-transmitting freshwater snail
CM Adema, LDW Hillier, CS Jones, ES Loker, M Knight, P Minx, ...
Nature communications 8 (1), 1-12, 2017
1562017
Restriction and recruitment-gene duplication and the origin and evolution of snake venom toxins
AD Hargreaves, MT Swain, MJ Hegarty, DW Logan, JF Mulley
Genome Biology and Evolution 6 (8), 2088-2095, 2014
1302014
Protein and small non-coding RNA-enriched extracellular vesicles are released by the pathogenic blood fluke Schistosoma mansoni
FC Nowacki, MT Swain, OI Klychnikov, U Niazi, A Ivens, JF Quintana, ...
Journal of extracellular vesicles 4 (1), 28665, 2015
1212015
Grid-enabling data mining applications with DataMiningGrid: An architectural perspective
V Stankovski, M Swain, V Kravtsov, T Niessen, D Wegener, J Kindermann, ...
Future Generation Computer Systems 24 (4), 259-279, 2008
1192008
De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification
SA Yates, MT Swain, MJ Hegarty, I Chernukin, M Lowe, GG Allison, ...
BMC genomics 15 (1), 1-15, 2014
1102014
Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement
JJ De Vega, S Ayling, M Hegarty, D Kudrna, JL Goicoechea, Å Ergon, ...
Scientific reports 5 (1), 1-10, 2015
922015
A metagenomic snapshot of taxonomic and functional diversity in an alpine glacier cryoconite ecosystem
A Edwards, JA Pachebat, M Swain, M Hegarty, AJ Hodson, ...
Environmental Research Letters 8 (3), 035003, 2013
922013
Upgrading short-read animal genome assemblies to chromosome level using comparative genomics and a universal probe set
J Damas, R O'Connor, M Farré, VPE Lenis, HJ Martell, A Mandawala, ...
Genome research 27 (5), 875-884, 2017
792017
Presence of Extensive Wolbachia Symbiont Insertions Discovered in the Genome of Its Host Glossina morsitans morsitans
C Brelsfoard, G Tsiamis, M Falchetto, LM Gomulski, E Telleria, U Alam, ...
PLoS neglected tropical diseases 8 (4), e2728, 2014
722014
Testing the Toxicofera: comparative transcriptomics casts doubt on the single, early evolution of the reptile venom system
AD Hargreaves, MT Swain, DW Logan, JF Mulley
Toxicon 92, 140-156, 2014
702014
Generation of whole genome sequences of new Cryptosporidium hominis and Cryptosporidium parvum isolates directly from stool samples
SJ Hadfield, JA Pachebat, MT Swain, G Robinson, SJS Cameron, ...
Bmc Genomics 16 (1), 1-12, 2015
532015
Correlation between bacterial G+ C content, genome size and the G+ C content of associated plasmids and bacteriophages
A Almpanis, M Swain, D Gatherer, N McEwan
Microbial genomics 4 (4), 2018
482018
Complex system simulations with qoscosgrid
K Kurowski, W de Back, W Dubitzky, L Gulyás, G Kampis, M Mamonski, ...
Computational Science–ICCS 2009, 387-396, 2009
472009
Epigenetic regulation of sex ratios may explain natural variation in self-fertilization rates
A Ellison, CM Rodriguez Lopez, P Moran, J Breen, M Swain, M Megias, ...
Proceedings of the Royal Society B: Biological Sciences 282 (1819), 20151900, 2015
432015
Evolutionary genomics of anthroponosis in Cryptosporidium
JL Nader, TC Mathers, BJ Ward, JA Pachebat, MT Swain, G Robinson, ...
Nature microbiology 4 (5), 826-836, 2019
412019
Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes
GM Attardo, AMM Abd-Alla, A Acosta-Serrano, JE Allen, R Bateta, ...
Genome biology 20 (1), 1-31, 2019
38*2019
Digging deep into the data mine with DataMiningGrid
V Stankovski, M Swain, V Kravtsov, T Niessen, D Wegener, M Röhm, ...
IEEE internet computing 12 (6), 69-76, 2008
362008
Comparative study of three commonly used continuous deterministic methods for modeling gene regulation networks
M Swain, J Mandel, W Dubitzky
BMC bioinformatics 11 (1), 459, 2010
342010
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