Mikhail Ponomarenko
Mikhail Ponomarenko
Novosibirsk State University; Institute of Cytology and Genetics, Novosibirsk, Russia
Verified email at bionet.nsc.ru - Homepage
Title
Cited by
Cited by
Year
Conformational and physicochemical DNA features specific for transcription factor binding sites.
JV Ponomarenko, MP Ponomarenko, AS Frolov, DG Vorobyev, ...
Bioinformatics (Oxford, England) 15 (7), 654-668, 1999
1051999
Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins.
MP Ponomarenko, JV Ponomarenko, AS Frolov, NL Podkolodny, ...
Bioinformatics (Oxford, England) 15 (7), 687-703, 1999
721999
rSNP_Guide: An integrated database‐tools system for studying SNPs and site‐directed mutations in transcription factor binding sites
JV Ponomarenko, GV Orlova, TI Merkulova, EV Gorshkova, ON Fokin, ...
Human mutation 20 (4), 239-248, 2002
692002
An experimental verification of the predicted effects of promoter TATA-box polymorphisms associated with human diseases on interactions between the TATA boxes and TATA-binding …
L Savinkova, I Drachkova, T Arshinova, P Ponomarenko, M Ponomarenko, ...
PloS one 8 (2), e54626, 2013
662013
TATA box polymorphisms in human gene promoters and associated hereditary pathologies
LK Savinkova, MP Ponomarenko, PM Ponomarenko, IA Drachkova, ...
Biochemistry (Moscow) 74 (2), 117-129, 2009
632009
Point mutations within 663–666 bp of intron 6 of the human TDO2 gene, associated with a number of psychiatric disorders, damage the YY-1 transcription factor binding site
GV Vasiliev, VM Merkulov, VF Kobzev, TI Merkulova, MP Ponomarenko, ...
FEBS letters 462 (1-2), 85-88, 1999
541999
Oligonucleotide frequency matrices addressed to recognizing functional DNA sites.
MP Ponomarenko, JV Ponomarenko, AS Frolov, OA Podkolodnaya, ...
Bioinformatics (Oxford, England) 15 (7), 631-643, 1999
531999
A step-by-step model of TBP/TATA box binding allows predicting human hereditary diseases by single nucleotide polymorphism
PM Ponomarenko, LK Savinkova, IA Drachkova, MV Lysova, ...
Doklady Biochemistry and Biophysics 419 (1), 88-92, 2008
472008
rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations
JV Ponomarenko, TI Merkulova, GV Vasiliev, ZB Levashova, GV Orlova, ...
Nucleic Acids Research 29 (1), 312-316, 2001
472001
SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites
AE Kel, MP Ponomarenko, EA Likhachev, YL Orlov, IV Ischenko, ...
Bioinformatics 9 (6), 617-627, 1993
421993
GenViewer: a computing tool for protein-coding regions prediction in nucleotide sequences
L Milanesi, NA Kolchanov, IB Rogozin, IV Ischenko, AE Kel, YL Orlov, ...
Bioinformatics, Supercomputing and Complex Genome Analysis, 573-587, 1993
391993
The Mechanism by which TATA‐Box Polymorphisms Associated with Human Hereditary Diseases Influence Interactions with the TATA‐Binding Protein
I Drachkova, L Savinkova, T Arshinova, M Ponomarenko, S Peltek, ...
Human Mutation 35 (5), 601-608, 2014
382014
ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another
JV Ponomarenko, DP Furman, AS Frolov, NL Podkolodny, GV Orlova, ...
Nucleic Acids Research 29 (1), 284-287, 2001
382001
SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data
JV Ponomarenko, GV Orlova, AS Frolov, MS Gelfand, MP Ponomarenko
Nucleic acids research 30 (1), 195-199, 2002
372002
Nucleosomal DNA property database.
VG Levitsky, MP Ponomarenko, JV Ponomarenko, AS Frolov, ...
Bioinformatics (Oxford, England) 15 (7), 582-592, 1999
361999
rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation
JV Ponomarenko, TI Merkulova, GV Orlova, ON Fokin, EV Gorshkova, ...
Nucleic acids research 31 (1), 118-121, 2003
332003
How to use SNP_TATA_Comparator to find a significant change in gene expression caused by the regulatory SNP of this gene’s promoter via a change in affinity of the TATA-binding …
M Ponomarenko, D Rasskazov, O Arkova, P Ponomarenko, V Suslov, ...
BioMed research international 2015, 2015
322015
Hogness box
M Ponomarenko, V Mironova, K Gunbin, L Savinkova
Brenner’s Encyclopedia of Genetics 3, 491-494, 2013
312013
ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro
VP Valuev, DA Afonnikov, MP Ponomarenko, L Milanesi, NA Kolchanov
Nucleic acids research 30 (1), 200-202, 2002
312002
Prediction of eukaryotic mRNA translational properties.
AV Kochetov, MP Ponomarenko, AS Frolov, LL Kisselev, NA Kolchanov
Bioinformatics (Oxford, England) 15 (7), 704-712, 1999
311999
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