| Natural selection affects multiple aspects of genetic variation at putatively neutral sites across the human genome KE Lohmueller, A Albrechtsen, Y Li, SY Kim, T Korneliussen, ... PLoS genetics 7 (10), e1002326, 2011 | 180 | 2011 |
| Identifying signatures of selection in genetic time series AF Feder, S Kryazhimskiy, JB Plotkin Genetics 196 (2), 509-522, 2014 | 102 | 2014 |
| LDx: estimation of linkage disequilibrium from high-throughput pooled resequencing data AF Feder, DA Petrov, AO Bergland PloS one 7 (11), e48588, 2012 | 95 | 2012 |
| More effective drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1 AF Feder, SY Rhee, SP Holmes, RW Shafer, DA Petrov, PS Pennings Elife 5, e10670, 2016 | 69 | 2016 |
| The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens BA Wilson, NR Garud, AF Feder, ZJ Assaf, PS Pennings Molecular ecology 25 (1), 42-66, 2016 | 50 | 2016 |
| Understanding patterns of HIV multi-drug resistance through models of temporal and spatial drug heterogeneity AF Feder, KN Harper, CJ Brumme, PS Pennings eLife 10, e69032, 2021 | 39* | 2021 |
| Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV K Theys, AF Feder, M Gelbart, M Hartl, A Stern, PS Pennings PLoS genetics 14 (6), e1007420, 2018 | 36* | 2018 |
| A spatio-temporal assessment of simian/human immunodeficiency virus (SHIV) evolution reveals a highly dynamic process within the host AF Feder, C Kline, P Polacino, M Cottrell, ADM Kashuba, BF Keele, SL Hu, ... PLoS pathogens 13 (5), e1006358, 2017 | 30 | 2017 |
| The clarifying role of time series data in the population genetics of HIV AF Feder, PS Pennings, DA Petrov PLoS genetics 17 (1), e1009050, 2021 | 28 | 2021 |
| Evolutionary Dynamics in Structured Populations Under Strong Population Genetic Forces AF Feder, PS Pennings, J Hermisson, DA Petrov G3: GENES, GENOMES, GENETICS 9 (10), 3395-3407, 2019 | 28 | 2019 |
| State-dependent evolutionary models reveal modes of solid tumour growth MA Lewinsohn, T Bedford, NF Müller, AF Feder Nature Ecology & Evolution 7 (4), 581-596, 2023 | 13 | 2023 |
| Brain tropism acquisition: The spatial dynamics and evolution of a measles virus collective infectious unit that drove lethal subacute sclerosing panencephalitis I Yousaf, WW Hannon, RC Donohue, CK Pfaller, K Yadav, RJ Dikdan, ... PLoS pathogens 19 (12), e1011817, 2023 | 4 | 2023 |
| The Relationship Between Haplotype-Based FST and Haplotype Length RS Mehta, AF Feder, SM Boca, NA Rosenberg Genetics 213 (1), 281-295, 2019 | 3 | 2019 |
| Elevated HIV viral load is associated with higher recombination rate in vivo EV Romero, AF Feder Molecular Biology and Evolution 41 (1), msad260, 2024 | 1 | 2024 |
| Abstract IA016: Bayesian phylodynamics to quantify cancer growth across space and time M Lewinsohn, T Bedford, NF Müller, A Feder Cancer Research 84 (3_Supplement_2), IA016-IA016, 2024 | | 2024 |
| WS13. 06 Regional bronchoscopy sampling indicates that Pseudomonas aeruginosa infections persist throughout the lung after elexacaftor/tezacaftor/ivacaftor (ETI) due to intra … SL Durfey, SG Kapnadak, M Teresi, T Gambol, MC Radey, HS Hayden, ... Journal of Cystic Fibrosis 22, S27, 2023 | | 2023 |
| 57 Bronchoscopy sampling finds that intra-lung bacterial migration contributes to persistent Pseudomonas aeruginosa infection after elexacaftor-tezacaftor-ivacaftor S Durfey, S Kapnadak, M Radey, M Teresi, T Gambol, H Hayden, ... Journal of cystic fibrosis 22, S31-S31, 2023 | | 2023 |
| The Evolutionary Dynamics of Rapidly Adapting Intra-Patient Pathogens Through Space and Time A Feder Stanford University, 2018 | | 2018 |
| Comparative analysis of derived mutations across human populations. A Feder, A Feder Oxford University, UK, 2013 | | 2013 |
| Elevated Viral Load is Associated with Higher Viral Recombination Rate In Vivo EV Romero, AF Feder | | |
