Marco Previtali
Marco Previtali
Verified email at unimib.it - Homepage
Title
Cited by
Cited by
Year
Fully dynamic de Bruijn graphs
D Belazzougui, T Gagie, V Mäkinen, M Previtali
International symposium on string processing and information retrieval, 145-152, 2016
252016
Bidirectional variable-order de Bruijn graphs
D Belazzougui, T Gagie, V Mäkinen, M Previtali, SJ Puglisi
LATIN 2016: Theoretical Informatics, 164-178, 2016
222016
LSG: an external-memory tool to compute string graphs for next-generation sequencing data assembly
P Bonizzoni, GD Vedova, Y Pirola, M Previtali, R Rizzi
Journal of Computational Biology 23 (3), 137-149, 2016
172016
FSG: fast string graph construction for de novo assembly
P Bonizzoni, GD Vedova, Y Pirola, M Previtali, R Rizzi
Journal of computational biology 24 (10), 953-968, 2017
142017
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
L Denti, R Rizzi, S Beretta, G Della Vedova, M Previtali, P Bonizzoni
BMC bioinformatics 19 (1), 444, 2018
122018
An external-memory algorithm for string graph construction
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
Algorithmica 78 (2), 394-424, 2017
112017
Constructing string graphs in external memory
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
International Workshop on Algorithms in Bioinformatics, 311-325, 2014
102014
Mapping RNA-seq data to a transcript graph via approximate pattern matching to a hypertext
S Beretta, P Bonizzoni, L Denti, M Previtali, R Rizzi
International Conference on Algorithms for Computational Biology, 49-61, 2017
92017
Divide and conquer computation of the multi-string BWT and LCP array
P Bonizzoni, G Della Vedova, S Nicosia, Y Pirola, M Previtali, R Rizzi
Conference on Computability in Europe, 107-117, 2018
72018
MALVA: genotyping by Mapping-free ALlele detection of known VAriants
L Denti, M Previtali, G Bernardini, A Schönhuth, P Bonizzoni
Iscience 18, 20-27, 2019
6*2019
A New Lightweight Algorithm to compute the BWT and the LCP array of a Set of Strings
P Bonizzoni, G Della Vedova, S Nicosia, M Previtali, R Rizzi
arXiv preprint arXiv:1607.08342, 2016
62016
Multithread Multistring Burrows–Wheeler Transform and Longest Common Prefix Array
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
Journal of Computational Biology 26 (9), 948-961, 2019
52019
Bidirectional variable-order de Bruijn graphs
D Belazzougui, T Gagie, V Mäkinen, M Previtali, SJ Puglisi
International Journal of Foundations of Computer Science 29 (08), 1279-1295, 2018
42018
FSG: fast string graph construction for de novo assembly of reads data
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
International Symposium on Bioinformatics Research and Applications, 27-39, 2016
42016
Computing the BWT and LCP array of a set of strings in external memory
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
arXiv preprint arXiv:1705.07756, 2017
32017
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era
R Rizzi, S Beretta, M Patterson, Y Pirola, M Previtali, G Della Vedova, ...
Quantitative Biology, 1-15, 2019
22019
Graph Theory and Definitions
S Beretta, L Denti, M Previtali
Academic Press, 2019
12019
Computing the multi-string BWT and LCP array in external memory
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
Theoretical Computer Science, 2020
2020
Shark: fishing relevant reads in an RNA-Seq sample
L Denti, Y Pirola, M Previtali, T Ceccato, G Della Vedova, R Rizzi, ...
Bioinformatics, 2020
2020
MALVIRUS: an integrated web application for viral variant calling
S Ciccolella, L Denti, P Bonizzoni, G Della Vedova, Y Pirola, M Previtali
bioRxiv, 2020
2020
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Articles 1–20