| Enhanced automated function prediction using distantly related sequences and contextual association by PFP T Hawkins, S Luban, D Kihara Protein Science 15 (6), 1550-1556, 2006 | 173 | 2006 |
| PFP: Automated prediction of gene ontology functional annotations with confidence scores using protein sequence data T Hawkins, M Chitale, S Luban, D Kihara Proteins: Structure, Function, and Bioinformatics 74 (3), 566-582, 2009 | 158 | 2009 |
| Function prediction of uncharacterized proteins T Hawkins, D Kihara Journal of bioinformatics and computational biology 5 (01), 1-30, 2007 | 134 | 2007 |
| Platelet-targeted gene therapy with human factor VIII establishes haemostasis in dogs with haemophilia A LM Du, P Nurden, AT Nurden, TC Nichols, DA Bellinger, ES Jensen, ... Nature communications 4 (1), 2773, 2013 | 120 | 2013 |
| ESG: extended similarity group method for automated protein function prediction M Chitale, T Hawkins, C Park, D Kihara Bioinformatics 25 (14), 1739-1745, 2009 | 111 | 2009 |
| Replication-competent lentivirus analysis of clinical grade vector products K Cornetta, J Yao, A Jasti, S Koop, M Douglas, D Hsu, LA Couture, ... Molecular Therapy 19 (3), 557-566, 2011 | 62 | 2011 |
| Platelet gene therapy improves hemostatic function for integrin αIIbβ3-deficient dogs J Fang, ES Jensen, MK Boudreaux, LM Du, TB Hawkins, SB Koukouritaki, ... Proceedings of the National Academy of Sciences 108 (23), 9583-9588, 2011 | 58 | 2011 |
| Mutation in erythroid specific transcription factor KLF1 causes Hereditary Spherocytosis in the Nan hemolytic anemia mouse model DP Heruth, T Hawkins, DP Logsdon, MI Gibson, IV Sokolovsky, ... Genomics 96 (5), 303-307, 2010 | 52 | 2010 |
| New paradigm in protein function prediction for large scale omics analysis T Hawkins, M Chitale, D Kihara Molecular BioSystems 4 (3), 223-231, 2008 | 41 | 2008 |
| Identifying viral integration sites using SeqMap 2.0 TB Hawkins, J Dantzer, B Peters, M Dinauer, K Mockaitis, S Mooney, ... Bioinformatics 27 (5), 720-722, 2011 | 40 | 2011 |
| Bioinformatics resources for cancer research with an emphasis on gene function and structure prediction tools D Kihara, YD Yang, T Hawkins Cancer Informatics 2, 117693510600200020, 2006 | 36 | 2006 |
| Oligonucleotide sequence motifs as nucleosome positioning signals CK Collings, AG Fernandez, CG Pitschka, TB Hawkins, JN Anderson PloS one 5 (6), e10933, 2010 | 35 | 2010 |
| Growth promotion and antibiotic induced metabolic shifts in the chicken gut microbiome G Plata, NT Baxter, D Susanti, A Volland-Munson, D Gangaiah, ... Communications Biology 5 (1), 293, 2022 | 34 | 2022 |
| Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP T Hawkins, M Chitale, D Kihara BMC bioinformatics 11, 1-22, 2010 | 23 | 2010 |
| The genetic consequences of dog breed formation—Accumulation of deleterious genetic variation and fixation of mutations associated with myxomatous mitral valve disease in … E Axelsson, I Ljungvall, P Bhoumik, LB Conn, E Muren, Å Ohlsson, ... PLoS genetics 17 (9), e1009726, 2021 | 17 | 2021 |
| Multi-Omics Characterization of Host-Derived Bacillus spp. Probiotics for Improved Growth Performance in Poultry D Susanti, A Volland, N Tawari, N Baxter, D Gangaiah, G Plata, ... Frontiers in Microbiology 12, 747845, 2021 | 16 | 2021 |
| Automated prediction of protein function from sequence M Chitale, T Hawkins, D Kihara Prediction of Protein Strucutre, Functions, and Interactions. Wiley, Hoboken, NJ, 2009 | 14 | 2009 |
| Retroviral vector integration in post-transplant hematopoiesis in mice conditioned with either submyeloablative or ablative irradiation MA Sadat, S Dirscherl, L Sastry, J Dantzer, N Pech, S Griffin, T Hawkins, ... Gene therapy 16 (12), 1452-1464, 2009 | 12 | 2009 |
| PFP: Automatic annotation of protein function by relative GO association in multiple functional contexts T Hawkins, D Kihara The 13th Annual International Conference on Intelligent Systems for …, 2005 | 11 | 2005 |
| The assessment of fecal volatile organic compounds in healthy infants: electronic nose device predicts patient demographics and microbial enterotype BD Hosfield, AR Pecoraro, NT Baxter, TB Hawkins, TA Markel Journal of Surgical Research 254, 340-347, 2020 | 10 | 2020 |
