Allison J. Lopatkin
Allison J. Lopatkin
Assistant Professor; Barnard College, Columbia University
Verified email at
Cited by
Cited by
Persistence and reversal of plasmid-mediated antibiotic resistance
AJ Lopatkin, HR Meredith, JK Srimani, C Pfeiffer, R Durrett, L You
Nature communications 8 (1), 1-10, 2017
Antibiotics as a selective driver for conjugation dynamics
AJ Lopatkin, S Huang, RP Smith, JK Srimani, TA Sysoeva, S Bewick, ...
Nature microbiology 1 (6), 1-8, 2016
A white-box machine learning approach for revealing antibiotic mechanisms of action
JH Yang, SN Wright, M Hamblin, D McCloskey, MA Alcantar, ...
Cell 177 (6), 1649-1661. e9, 2019
Collective antibiotic tolerance: mechanisms, dynamics and intervention
HR Meredith, JK Srimani, AJ Lee, AJ Lopatkin, L You
Nature chemical biology 11 (3), 182-188, 2015
Bacterial Metabolism and Antibiotic Efficacy
JM Stokes, AJ Lopatkin, MA Lobritz, JJ Collins
Cell Metabolism, 2019
Bacterial metabolic state more accurately predicts antibiotic lethality than growth rate
AJ Lopatkin, JM Stokes, EJ Zheng, JH Yang, MK Takahashi, L You, ...
Nature microbiology 4 (12), 2109-2117, 2019
Dissecting the effects of antibiotics on horizontal gene transfer: Analysis suggests a critical role of selection dynamics
AJ Lopatkin, TA Sysoeva, L You
Bioessays 38 (12), 1283-1292, 2016
Predictive biology: modelling, understanding and harnessing microbial complexity
AJ Lopatkin, JJ Collins
Nature Reviews Microbiology 18 (9), 507-520, 2020
Bacterial temporal dynamics enable optimal design of antibiotic treatment
HR Meredith, AJ Lopatkin, DJ Anderson, L You
PLoS computational biology 11 (4), e1004201, 2015
Dynamic control and quantification of bacterial population dynamics in droplets
S Huang, JK Srimani, AJ Lee, Y Zhang, AJ Lopatkin, KW Leong, L You
Biomaterials 61, 239-245, 2015
Elements of biological oscillations in time and space
Y Cao, A Lopatkin, L You
Nature structural & molecular biology 23 (12), 1030-1034, 2016
Applying ecological resistance and resilience to dissect bacterial antibiotic responses
HR Meredith, V Andreani, HR Ma, AJ Lopatkin, AJ Lee, DJ Anderson, ...
Science advances 4 (12), eaau1873, 2018
A multiplexable assay for screening antibiotic lethality against drug-tolerant bacteria
JM Stokes, A Gutierrez, AJ Lopatkin, IW Andrews, S French, I Matic, ...
Nature methods 16 (4), 303-306, 2019
Drug detoxification dynamics explain the postantibiotic effect
JK Srimani, S Huang, AJ Lopatkin, L You
Molecular systems biology 13 (10), 948, 2017
A unifying framework for interpreting and predicting mutualistic systems
F Wu, AJ Lopatkin, DA Needs, CT Lee, S Mukherjee, L You
Nature communications 10 (1), 1-10, 2019
Clinically relevant mutations in core metabolic genes confer antibiotic resistance
AJ Lopatkin, SC Bening, AL Manson, JM Stokes, MA Kohanski, ...
Science 371 (6531), 2021
Persistence and reversal of plasmid-mediated antibiotic resistance. Nat Commun 8: 1689
AJ Lopatkin, HR Meredith, JK Srimani, C Pfeiffer, R Durrett, L You
Antibiotics as a selective driver for conjugation dynamics. Nat Microbiol 1: 16044
AJ Lopatkin, S Huang, RP Smith, JK Srimani, TA Sysoeva, S Bewick, ...
Cooperation and competition shape ecological resistance during periodic spatial disturbance of engineered bacteria
CE Wilson, AJ Lopatkin, TJA Craddock, WW Driscoll, OT Eldakar, ...
Scientific reports 7 (1), 1-13, 2017
Environmental and genetic determinants of plasmid mobility in pathogenic Escherichia coli
JH Bethke, A Davidovich, L Cheng, AJ Lopatkin, W Song, JT Thaden, ...
Science advances 6 (4), eaax3173, 2020
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