Reconstruction and flux‐balance analysis of the Plasmodium falciparum metabolic network G Plata, TL Hsiao, KL Olszewski, M Llinás, D Vitkup Molecular systems biology 6 (1), 408, 2010 | 165 | 2010 |
Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response T Sakurai, G Plata, F Rodríguez-Zapata, M Seki, A Salcedo, A Toyoda, ... BMC Plant Biology 7, 1-17, 2007 | 127 | 2007 |
Long-term phenotypic evolution of bacteria G Plata, CS Henry, D Vitkup Nature 517 (7534), 369-372, 2015 | 79 | 2015 |
Global probabilistic annotation of metabolic networks enables enzyme discovery G Plata, T Fuhrer, TL Hsiao, U Sauer, D Vitkup Nature Chemical Biology, 2012 | 69 | 2012 |
The COMBREX project: design, methodology, and initial results BP Anton, YC Chang, P Brown, HP Choi, LL Faller, J Guleria, Z Hu, ... PLoS biology 11 (8), e1001638, 2013 | 66 | 2013 |
Identification of cassava microRNAs under abiotic stress C Ballén-Taborda, G Plata, S Ayling, F Rodríguez-Zapata, ... International journal of genomics 2013, 2013 | 61 | 2013 |
Genetic robustness and functional evolution of gene duplicates G Plata, D Vitkup Nucleic acids research 42 (4), 2405-2414, 2014 | 48 | 2014 |
The rate of the molecular clock and the cost of gratuitous protein synthesis G Plata, ME Gottesman, D Vitkup Genome biology 11, 1-10, 2010 | 38 | 2010 |
Two novel DNAs that enhance symptoms and overcome CMD2 resistance to cassava mosaic disease J Ndunguru, L De León, CD Doyle, P Sseruwagi, G Plata, JP Legg, ... Journal of virology 90 (8), 4160-4173, 2016 | 37 | 2016 |
Growth promotion and antibiotic induced metabolic shifts in the chicken gut microbiome G Plata, NT Baxter, D Susanti, A Volland-Munson, D Gangaiah, ... Communications Biology 5 (1), 293, 2022 | 34 | 2022 |
Molecular function limits divergent protein evolution on planetary timescales MM Konate, G Plata, J Park, DR Usmanova, H Wang, D Vitkup Elife 8, e39705, 2019 | 26 | 2019 |
Protein stability and avoidance of toxic misfolding do not explain the sequence constraints of highly expressed proteins G Plata, D Vitkup Molecular biology and evolution 35 (3), 700-703, 2018 | 22 | 2018 |
Multi-Omics Characterization of Host-Derived Bacillus spp. Probiotics for Improved Growth Performance in Poultry D Susanti, A Volland, N Tawari, N Baxter, D Gangaiah, G Plata, ... Frontiers in Microbiology 12, 747845, 2021 | 18 | 2021 |
Sequences enhancing cassava mosaic disease symptoms occur in the cassava genome and are associated with South African cassava mosaic virus infection AT Maredza, F Allie, G Plata, MEC Rey Molecular Genetics and Genomics 291, 1467-1485, 2016 | 13 | 2016 |
SiGMoiD: A super-statistical generative model for binary data X Zhao, G Plata, PD Dixit PLoS Computational Biology 17 (8), e1009275, 2021 | 12 | 2021 |
The relationship between the misfolding avoidance hypothesis and protein evolutionary rates in the light of empirical evidence DR Usmanova, G Plata, D Vitkup Genome Biology and Evolution 13 (2), evab006, 2021 | 10 | 2021 |
In silico, in vitro and in vivo characterization of host-associated Latilactobacillus curvatus strains for potential probiotic applications in farmed Atlantic salmon (Salmo salar) HS Cathers, SP Mane, NR Tawari, J Balakuntla, G Plata, M Krishnamurthy, ... Scientific Reports 12 (1), 18417, 2022 | 3 | 2022 |
Interactions between time on diet, antibiotic treatment, and liver abscess development on the fecal microbiome of beef cattle G Plata, NT Baxter, TB Hawkins, L Huntimer, A Nagireddy, D Susanti, ... bioRxiv, 2022.09. 16.508319, 2022 | 1 | 2022 |
Designing host-associated microbiomes using the consumer/resource model G Plata, M Krishnamurthy, L Herron, P Dixit bioRxiv, 2023.04. 28.538625, 2023 | | 2023 |
SMbiot: A Shared Latent Model for Microbiomes and their Hosts M Krishnamurthy, L Herron, D Susanti, A Volland-Munson, G Plata, P Dixit bioRxiv, 2022.10. 28.514090, 2022 | | 2022 |